Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Gm22238-201ENSMUST00000175222 88 ntBASIC17.67■□□□□ 0.42
Rfx3P48381 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Rfx3P48381 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.67■□□□□ 0.42
Rfx3P48381 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Rfx3P48381 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx3P48381 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx3P48381 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx3P48381 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Rfx3P48381 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC17.66■□□□□ 0.42
Rfx3P48381 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx3P48381 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx3P48381 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx3P48381 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Gm14117-201ENSMUST00000122417 843 ntBASIC17.65■□□□□ 0.42
Rfx3P48381 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Rfx3P48381 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx3P48381 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Rfx3P48381 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx3P48381 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Rfx3P48381 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC17.64■□□□□ 0.41
Rfx3P48381 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.64■□□□□ 0.41
Rfx3P48381 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC17.64■□□□□ 0.41
Rfx3P48381 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.64■□□□□ 0.41
Rfx3P48381 Gm43530-201ENSMUST00000195920 274 ntBASIC17.64■□□□□ 0.41
Rfx3P48381 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
Rfx3P48381 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.64■□□□□ 0.41
Rfx3P48381 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC17.64■□□□□ 0.41
Rfx3P48381 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Rfx3P48381 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx3P48381 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Rfx3P48381 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx3P48381 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC17.63■□□□□ 0.41
Rfx3P48381 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Rfx3P48381 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Rfx3P48381 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Rfx3P48381 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx3P48381 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx3P48381 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx3P48381 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx3P48381 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx3P48381 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx3P48381 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx3P48381 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.62■□□□□ 0.41
Rfx3P48381 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Rfx3P48381 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rfx3P48381 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.62■□□□□ 0.41
Rfx3P48381 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Rfx3P48381 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx3P48381 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC17.61■□□□□ 0.41
Rfx3P48381 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx3P48381 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.61■□□□□ 0.41
Rfx3P48381 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Rfx3P48381 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx3P48381 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rfx3P48381 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.61■□□□□ 0.41
Rfx3P48381 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.6■□□□□ 0.41
Rfx3P48381 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Rfx3P48381 Mir6236-201ENSMUST00000184437 123 ntBASIC17.6■□□□□ 0.41
Rfx3P48381 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Rfx3P48381 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rfx3P48381 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Rfx3P48381 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Rfx3P48381 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms