Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.61■□□□□ 0.57
Msx1P13297 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx1P13297 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx1P13297 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx1P13297 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx1P13297 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx1P13297 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Msx1P13297 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx1P13297 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Msx1P13297 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msx1P13297 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msx1P13297 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Msx1P13297 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Msx1P13297 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.59■□□□□ 0.57
Msx1P13297 Gm43530-201ENSMUST00000195920 274 ntBASIC18.59■□□□□ 0.57
Msx1P13297 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msx1P13297 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.58■□□□□ 0.57
Msx1P13297 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Msx1P13297 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Msx1P13297 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC18.58■□□□□ 0.56
Msx1P13297 Gm18671-201ENSMUST00000214826 683 ntBASIC18.58■□□□□ 0.56
Msx1P13297 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC18.58■□□□□ 0.56
Msx1P13297 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msx1P13297 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Msx1P13297 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msx1P13297 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msx1P13297 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msx1P13297 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.58■□□□□ 0.56
Msx1P13297 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msx1P13297 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msx1P13297 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Msx1P13297 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.57■□□□□ 0.56
Msx1P13297 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msx1P13297 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msx1P13297 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC18.56■□□□□ 0.56
Msx1P13297 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18.56■□□□□ 0.56
Msx1P13297 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msx1P13297 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msx1P13297 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Msx1P13297 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msx1P13297 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msx1P13297 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Msx1P13297 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.55■□□□□ 0.56
Msx1P13297 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Msx1P13297 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msx1P13297 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.55■□□□□ 0.56
Msx1P13297 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msx1P13297 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC18.54■□□□□ 0.56
Msx1P13297 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msx1P13297 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.54■□□□□ 0.56
Msx1P13297 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Msx1P13297 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msx1P13297 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msx1P13297 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Msx1P13297 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msx1P13297 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msx1P13297 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Msx1P13297 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msx1P13297 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msx1P13297 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msx1P13297 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msx1P13297 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.53■□□□□ 0.56
Msx1P13297 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
Msx1P13297 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msx1P13297 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msx1P13297 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Msx1P13297 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.52■□□□□ 0.56
Msx1P13297 Smad6-203ENSMUST00000179458 273 ntBASIC18.52■□□□□ 0.56
Msx1P13297 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC18.52■□□□□ 0.56
Msx1P13297 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Msx1P13297 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Msx1P13297 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
Msx1P13297 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Msx1P13297 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Msx1P13297 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
Msx1P13297 AV356131-201ENSMUST00000206201 750 ntBASIC18.51■□□□□ 0.55
Msx1P13297 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.51■□□□□ 0.55
Msx1P13297 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Msx1P13297 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms