Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.86■□□□□ 0.61
Clip3B9EHT4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.86■□□□□ 0.61
Clip3B9EHT4 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.86■□□□□ 0.61
Clip3B9EHT4 Gm43173-201ENSMUST00000202246 593 ntBASIC18.86■□□□□ 0.61
Clip3B9EHT4 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Clip3B9EHT4 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clip3B9EHT4 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clip3B9EHT4 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Clip3B9EHT4 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clip3B9EHT4 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Clip3B9EHT4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clip3B9EHT4 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clip3B9EHT4 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Clip3B9EHT4 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Clip3B9EHT4 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clip3B9EHT4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clip3B9EHT4 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Clip3B9EHT4 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Clip3B9EHT4 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clip3B9EHT4 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clip3B9EHT4 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.83■□□□□ 0.6
Clip3B9EHT4 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.83■□□□□ 0.6
Clip3B9EHT4 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.83■□□□□ 0.6
Clip3B9EHT4 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clip3B9EHT4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Clip3B9EHT4 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Clip3B9EHT4 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Clip3B9EHT4 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.81■□□□□ 0.6
Clip3B9EHT4 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clip3B9EHT4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.8■□□□□ 0.6
Clip3B9EHT4 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Gm26833-201ENSMUST00000180899 440 ntBASIC18.8■□□□□ 0.6
Clip3B9EHT4 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clip3B9EHT4 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clip3B9EHT4 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms