Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm9645-201ENSMUST00000197131 792 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm43532-201ENSMUST00000199389 3816 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm3912-202ENSMUST00000210164 643 ntTSL 3 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC8.21□□□□□ -1.1
Hmgb3O54879 AC114645.1-201ENSMUST00000215831 187 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Tmem19-204ENSMUST00000217887 3084 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Cd300a-201ENSMUST00000045151 4633 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Olfr417-202ENSMUST00000217962 5662 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Cel-201ENSMUST00000028161 2063 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Eif4e2-201ENSMUST00000050876 2869 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm17816-201ENSMUST00000219991 2603 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Ubap2l-208ENSMUST00000196843 3975 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Tcf4-201ENSMUST00000066717 4250 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Mthfr-202ENSMUST00000097788 2652 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Wdcp-206ENSMUST00000223551 4317 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Etohd2-201ENSMUST00000162450 4862 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm28138-201ENSMUST00000186250 2167 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm29270-201ENSMUST00000188071 2167 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm29392-201ENSMUST00000189429 2167 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm29252-201ENSMUST00000189869 2167 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm29305-201ENSMUST00000191054 2167 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm17213-201ENSMUST00000165161 1360 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm26780-201ENSMUST00000180748 2495 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Apex2-205ENSMUST00000112725 3613 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Mrpl17-202ENSMUST00000124482 7300 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 1700019J19Rik-205ENSMUST00000216531 2813 ntTSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm1661-201ENSMUST00000077500 1422 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 AU018091-201ENSMUST00000171749 3449 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm15953-201ENSMUST00000117656 1732 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 Smim7-203ENSMUST00000167290 2892 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Nlrc5-202ENSMUST00000098489 1721 ntTSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Top3a-203ENSMUST00000117743 2932 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Stx17-203ENSMUST00000107721 1771 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Cyp1a1-202ENSMUST00000216433 2697 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Parp10-201ENSMUST00000075689 3284 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 Cpvl-201ENSMUST00000166545 1597 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Masp2-202ENSMUST00000105701 738 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm15808-201ENSMUST00000119046 604 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm12489-201ENSMUST00000119364 148 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm15031-201ENSMUST00000121341 210 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm43380-201ENSMUST00000200421 220 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm30671-201ENSMUST00000214898 318 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 AC099645.1-201ENSMUST00000226476 1105 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Zfp185-201ENSMUST00000114546 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Vps11-201ENSMUST00000034644 3536 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Rhbdf2-201ENSMUST00000103028 3855 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm44815-201ENSMUST00000206812 1633 ntBASIC8.2□□□□□ -1.1
Hmgb3O54879 Plch1-202ENSMUST00000059973 6241 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Ctbp2-214ENSMUST00000169570 3604 ntTSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Dusp27-201ENSMUST00000085992 4018 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Plekhs1-202ENSMUST00000178590 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Plekhs1-201ENSMUST00000039666 2378 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gdi2-201ENSMUST00000059515 2077 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Polr3c-206ENSMUST00000154679 2406 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Akt2-204ENSMUST00000108343 3122 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Sec23ip-201ENSMUST00000042942 4505 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Arhgap27-201ENSMUST00000041385 3512 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Utp20-201ENSMUST00000004470 8821 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
Hmgb3O54879 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Acvr1-203ENSMUST00000112599 2891 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Zcchc12-204ENSMUST00000115258 2181 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Hmgb3O54879 Gm45757-201ENSMUST00000211835 1480 ntBASIC8.19□□□□□ -1.1
Hmgb3O54879 Gpr19-213ENSMUST00000215088 1484 ntTSL 5 BASIC8.19□□□□□ -1.1
Hmgb3O54879 Apol7b-201ENSMUST00000089469 2210 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
Hmgb3O54879 Cul4b-201ENSMUST00000016681 3354 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
Hmgb3O54879 Esrrg-201ENSMUST00000027906 5293 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
Hmgb3O54879 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
Hmgb3O54879 H2-Ob-201ENSMUST00000095342 2671 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
Hmgb3O54879 Gm43318-201ENSMUST00000199939 1949 ntBASIC8.19□□□□□ -1.1
Hmgb3O54879 Gm28557-203ENSMUST00000186303 3886 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
Retrieved 100 of 76,532 protein–RNA pairs in 115.9 ms