Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Igsf11-202ENSMUST00000114706 1578 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Tstd2-202ENSMUST00000107772 3726 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Gm29125-201ENSMUST00000187121 3220 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Ctcfl-201ENSMUST00000094287 3217 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Traf1P39428 Hrh1-201ENSMUST00000088987 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 9530059O14Rik-204ENSMUST00000215759 1606 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Ufsp2-201ENSMUST00000034051 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Tom1l2-204ENSMUST00000095254 4940 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Gm4884-201ENSMUST00000164422 2852 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Traf1P39428 Faf2-201ENSMUST00000026991 1748 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Bpifb2-201ENSMUST00000028983 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Pcdhga5-201ENSMUST00000193414 4664 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Slc7a9-203ENSMUST00000118969 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Gm15832-201ENSMUST00000146314 1832 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Tfdp1-204ENSMUST00000209885 2511 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Ptgr2-201ENSMUST00000123614 3168 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Gm9-201ENSMUST00000101636 817 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Gm13505-201ENSMUST00000121666 817 ntBASIC11.75□□□□□ -0.53
Traf1P39428 Gm16234-201ENSMUST00000124976 815 ntTSL 5 BASIC11.75□□□□□ -0.53
Traf1P39428 Gm24352-201ENSMUST00000158966 125 ntBASIC11.75□□□□□ -0.53
Traf1P39428 Gm17797-201ENSMUST00000182175 997 ntBASIC11.75□□□□□ -0.53
Traf1P39428 Gm7583-201ENSMUST00000182941 1005 ntBASIC11.75□□□□□ -0.53
Traf1P39428 Pou1f1-205ENSMUST00000184525 1020 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Gm38233-201ENSMUST00000194259 807 ntBASIC11.75□□□□□ -0.53
Traf1P39428 Map7-203ENSMUST00000213312 795 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Fibp-205ENSMUST00000225141 1209 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Traf1P39428 Gm9790-201ENSMUST00000054148 288 ntBASIC11.75□□□□□ -0.53
Traf1P39428 Zfp658-201ENSMUST00000005597 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Mak-203ENSMUST00000165087 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Pax5-202ENSMUST00000102932 1460 ntTSL 5 BASIC11.75□□□□□ -0.53
Traf1P39428 Tdrd1-202ENSMUST00000111604 5187 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Gpm6b-206ENSMUST00000112228 3083 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Serpina1e-202ENSMUST00000122229 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Myo18a-223ENSMUST00000169105 6475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Calr4-201ENSMUST00000030285 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Traf1P39428 Ank3-220ENSMUST00000182439 2586 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 5430434F05Rik-201ENSMUST00000206080 3553 ntBASIC11.74□□□□□ -0.53
Traf1P39428 Lhx9-202ENSMUST00000046870 3645 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
Traf1P39428 Zfp944-201ENSMUST00000115535 2784 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Traf1P39428 Adgb-201ENSMUST00000045328 1893 ntTSL 2 BASIC11.74□□□□□ -0.53
Traf1P39428 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Itga7-202ENSMUST00000218290 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Fam161b-202ENSMUST00000065536 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Zfp74-204ENSMUST00000108212 2060 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Drc3-201ENSMUST00000070805 2061 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Trim9-205ENSMUST00000221041 3767 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 2810032G03Rik-202ENSMUST00000163627 2514 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Scgb1b29-201ENSMUST00000108094 282 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Gm7861-201ENSMUST00000110749 506 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Gm7849-201ENSMUST00000110752 488 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Gm12977-201ENSMUST00000133742 942 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Optc-204ENSMUST00000149380 1180 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC11.74□□□□□ -0.53
Traf1P39428 Gm16080-201ENSMUST00000152128 692 ntTSL 3 BASIC11.74□□□□□ -0.53
Traf1P39428 Gm15641-201ENSMUST00000161407 670 ntTSL 3 BASIC11.74□□□□□ -0.53
Traf1P39428 Gm27953-201ENSMUST00000185171 143 ntBASIC11.74□□□□□ -0.53
Traf1P39428 Prss23os-203ENSMUST00000208814 975 ntTSL 5 BASIC11.74□□□□□ -0.53
Traf1P39428 Prss23os-204ENSMUST00000209064 972 ntTSL 5 BASIC11.74□□□□□ -0.53
Traf1P39428 Pln-205ENSMUST00000219921 531 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Traf1P39428 AC161763.1-201ENSMUST00000227063 168 ntBASIC11.74□□□□□ -0.53
Traf1P39428 AC161581.1-201ENSMUST00000228696 318 ntBASIC11.74□□□□□ -0.53
Traf1P39428 Olfr1199-201ENSMUST00000099813 933 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Traf1P39428 D030068K23Rik-203ENSMUST00000181098 1399 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Gm7061-201ENSMUST00000118127 1416 ntBASIC11.74□□□□□ -0.53
Traf1P39428 Gm10344-201ENSMUST00000193498 1419 ntBASIC11.74□□□□□ -0.53
Traf1P39428 Phf20-ps-201ENSMUST00000185066 2886 ntBASIC11.74□□□□□ -0.53
Traf1P39428 Lrrc61-202ENSMUST00000114545 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Katnal2-211ENSMUST00000154665 1515 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Pcgf5-202ENSMUST00000071267 1508 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 C8b-202ENSMUST00000065072 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Fhad1-203ENSMUST00000105780 4809 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Traf1P39428 Bicral-201ENSMUST00000040624 6579 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 5730596B20Rik-201ENSMUST00000070587 3354 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Traf1P39428 Zfp42-201ENSMUST00000082120 1772 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Tbce-201ENSMUST00000039894 1844 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Msrb3-201ENSMUST00000092143 3843 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Gm37567-201ENSMUST00000193241 2279 ntBASIC11.74□□□□□ -0.53
Traf1P39428 Morc2a-201ENSMUST00000093389 5085 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Traf1P39428 Akap1-203ENSMUST00000107904 2673 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 Gpm6b-201ENSMUST00000060210 2858 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Arhgap17-202ENSMUST00000106442 3336 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Togaram2-201ENSMUST00000097284 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Dnajc14-202ENSMUST00000217745 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Htr2c-202ENSMUST00000096299 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC11.73□□□□□ -0.53
Traf1P39428 Fbxl18-202ENSMUST00000110766 7857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Mx1-202ENSMUST00000113768 2695 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Gm14239-201ENSMUST00000116491 685 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Gm13197-201ENSMUST00000117204 225 ntBASIC11.73□□□□□ -0.53
Traf1P39428 Gm7598-201ENSMUST00000130251 3123 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 4933439C10Rik-203ENSMUST00000132226 3184 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Traf1P39428 Gm15015-201ENSMUST00000135491 636 ntTSL 3 BASIC11.73□□□□□ -0.53
Traf1P39428 Gm15020-201ENSMUST00000147142 636 ntTSL 3 BASIC11.73□□□□□ -0.53
Traf1P39428 Oprm1-230ENSMUST00000154906 2039 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms