Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm45153-201ENSMUST00000205957 1901 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Ncor1-204ENSMUST00000101066 8852 ntAPPRIS P2 TSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Psmb11-201ENSMUST00000097177 4247 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Zcchc12-202ENSMUST00000115256 2197 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
Hmgb3O54879 AC158636.1-201ENSMUST00000220118 1393 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Prdm15-201ENSMUST00000095849 6346 ntAPPRIS P2 TSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm1559-201ENSMUST00000219596 3117 ntTSL 3 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Mir877-201ENSMUST00000104738 85 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm6881-201ENSMUST00000121811 833 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm8737-201ENSMUST00000122208 642 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 1700001J04Rik-202ENSMUST00000154037 743 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm27203-201ENSMUST00000183677 307 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm3551-201ENSMUST00000190750 664 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC8.27□□□□□ -1.09
Hmgb3O54879 AC115122.1-201ENSMUST00000224850 1040 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm5114-201ENSMUST00000108017 3047 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Snrpd3-201ENSMUST00000020397 3036 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm20743-202ENSMUST00000194322 2830 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Rexo5-203ENSMUST00000106520 2492 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 AC115891.3-201ENSMUST00000219161 2472 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Rorc-201ENSMUST00000029795 2136 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gpatch1-201ENSMUST00000079693 3065 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Mrps14-203ENSMUST00000135680 2999 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Cdc5l-201ENSMUST00000024727 2989 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Unc80-206ENSMUST00000212557 9777 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Piwil4-201ENSMUST00000076946 2637 ntTSL 2 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm43817-201ENSMUST00000196459 2262 ntBASIC8.27□□□□□ -1.09
Hmgb3O54879 Prpf31-206ENSMUST00000179769 3125 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Cux1-201ENSMUST00000004097 12862 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC8.27□□□□□ -1.09
Hmgb3O54879 Eif2d-203ENSMUST00000112446 2153 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Hectd2os-203ENSMUST00000142067 2662 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Bpifb9a-201ENSMUST00000088924 2065 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Wdr27-201ENSMUST00000170386 2574 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Samhd1-201ENSMUST00000057725 3926 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Zmym6-202ENSMUST00000094713 3922 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Plekhg1-202ENSMUST00000120274 7369 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Vps8-205ENSMUST00000118138 3060 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Srprb-201ENSMUST00000035157 3064 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Dlgap4-202ENSMUST00000070782 3303 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm42979-201ENSMUST00000196287 2228 ntBASIC8.26□□□□□ -1.09
Hmgb3O54879 Slc7a9-202ENSMUST00000118383 1869 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Lonp2-203ENSMUST00000122188 2372 ntTSL 2 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Myc-208ENSMUST00000191178 1362 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Zfp229-201ENSMUST00000065871 4525 ntAPPRIS P1 TSL 3 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Lif-201ENSMUST00000040750 3798 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Zfp944-201ENSMUST00000115535 2784 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm43813-201ENSMUST00000196847 2294 ntTSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Naip2-202ENSMUST00000117913 4823 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Kif3a-203ENSMUST00000120613 3161 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Impdh2-ps-201ENSMUST00000120826 1545 ntBASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Smgc-204ENSMUST00000109277 855 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm16755-201ENSMUST00000180595 933 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Rian-213ENSMUST00000182981 1219 ntTSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm5543-201ENSMUST00000193329 1091 ntBASIC8.26□□□□□ -1.09
Hmgb3O54879 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm2253-201ENSMUST00000211775 414 ntBASIC8.26□□□□□ -1.09
Hmgb3O54879 AC164429.1-201ENSMUST00000224210 518 ntBASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm43305-202ENSMUST00000225083 705 ntBASIC8.26□□□□□ -1.09
Hmgb3O54879 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Atp6v1e2-201ENSMUST00000065758 1005 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Olfr1328-201ENSMUST00000081960 944 ntAPPRIS P2 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Abcc12-205ENSMUST00000152438 3083 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gm44095-201ENSMUST00000204631 1931 ntBASIC8.26□□□□□ -1.09
Hmgb3O54879 D5Ertd579e-201ENSMUST00000031091 6677 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Tmem135-201ENSMUST00000041968 3700 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Gramd1b-203ENSMUST00000119373 3857 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Rufy4-201ENSMUST00000080167 2306 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Tstd2-201ENSMUST00000107770 2700 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Uox-201ENSMUST00000029837 2737 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Clstn3-201ENSMUST00000008297 4014 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Lysmd4-204ENSMUST00000207823 3772 ntAPPRIS ALT2 TSL 2 BASIC8.26□□□□□ -1.09
Hmgb3O54879 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Hmgb3O54879 Wdr77-201ENSMUST00000010278 3682 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Retrieved 100 of 76,532 protein–RNA pairs in 81.6 ms