Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prpf40aQ9R1C7 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prpf40aQ9R1C7 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prpf40aQ9R1C7 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prpf40aQ9R1C7 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prpf40aQ9R1C7 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prpf40aQ9R1C7 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC21.63■■□□□ 1.05
Prpf40aQ9R1C7 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Prpf40aQ9R1C7 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Prpf40aQ9R1C7 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.61■■□□□ 1.05
Prpf40aQ9R1C7 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
Prpf40aQ9R1C7 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Prpf40aQ9R1C7 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.61■■□□□ 1.05
Prpf40aQ9R1C7 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.61■■□□□ 1.05
Prpf40aQ9R1C7 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Prpf40aQ9R1C7 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Prpf40aQ9R1C7 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Golph3-202ENSMUST00000226517 2359 ntBASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Prpf40aQ9R1C7 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Prpf40aQ9R1C7 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Prpf40aQ9R1C7 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Prpf40aQ9R1C7 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Prpf40aQ9R1C7 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC21.58■■□□□ 1.05
Prpf40aQ9R1C7 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.58■■□□□ 1.05
Prpf40aQ9R1C7 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.58■■□□□ 1.05
Prpf40aQ9R1C7 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Prpf40aQ9R1C7 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Prpf40aQ9R1C7 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Prpf40aQ9R1C7 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Prpf40aQ9R1C7 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Prpf40aQ9R1C7 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Gm12821-201ENSMUST00000120022 600 ntBASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Prpf40aQ9R1C7 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Prpf40aQ9R1C7 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Prpf40aQ9R1C7 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms