Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Gm13241-201ENSMUST00000094493 780 ntBASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Clrn3Q8BHH8 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clrn3Q8BHH8 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
Clrn3Q8BHH8 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clrn3Q8BHH8 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Clrn3Q8BHH8 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Clrn3Q8BHH8 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clrn3Q8BHH8 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.4■□□□□ 0.54
Clrn3Q8BHH8 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Clrn3Q8BHH8 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Clrn3Q8BHH8 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Clrn3Q8BHH8 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Clrn3Q8BHH8 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clrn3Q8BHH8 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Clrn3Q8BHH8 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Clrn3Q8BHH8 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Clrn3Q8BHH8 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Clrn3Q8BHH8 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Clrn3Q8BHH8 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.37■□□□□ 0.53
Clrn3Q8BHH8 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Clrn3Q8BHH8 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clrn3Q8BHH8 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
Clrn3Q8BHH8 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clrn3Q8BHH8 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Clrn3Q8BHH8 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Clrn3Q8BHH8 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms