Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
ClpbQ60649 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ClpbQ60649 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
ClpbQ60649 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
ClpbQ60649 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ClpbQ60649 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ClpbQ60649 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ClpbQ60649 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ClpbQ60649 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ClpbQ60649 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ClpbQ60649 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.88■□□□□ 0.61
ClpbQ60649 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Gm43137-201ENSMUST00000198052 594 ntBASIC18.88■□□□□ 0.61
ClpbQ60649 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
ClpbQ60649 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
ClpbQ60649 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ClpbQ60649 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ClpbQ60649 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
ClpbQ60649 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
ClpbQ60649 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ClpbQ60649 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
ClpbQ60649 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.86■□□□□ 0.61
ClpbQ60649 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
ClpbQ60649 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
ClpbQ60649 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
ClpbQ60649 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.86■□□□□ 0.61
ClpbQ60649 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.86■□□□□ 0.61
ClpbQ60649 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
ClpbQ60649 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ClpbQ60649 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
ClpbQ60649 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ClpbQ60649 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.85■□□□□ 0.61
ClpbQ60649 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ClpbQ60649 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ClpbQ60649 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
ClpbQ60649 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ClpbQ60649 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ClpbQ60649 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
ClpbQ60649 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
ClpbQ60649 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
ClpbQ60649 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ClpbQ60649 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
ClpbQ60649 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ClpbQ60649 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ClpbQ60649 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.84■□□□□ 0.61
ClpbQ60649 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ClpbQ60649 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.84■□□□□ 0.61
ClpbQ60649 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.84■□□□□ 0.61
ClpbQ60649 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.84■□□□□ 0.61
ClpbQ60649 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.84■□□□□ 0.61
ClpbQ60649 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ClpbQ60649 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ClpbQ60649 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ClpbQ60649 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ClpbQ60649 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ClpbQ60649 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
ClpbQ60649 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.83■□□□□ 0.6
ClpbQ60649 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.83■□□□□ 0.6
ClpbQ60649 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ClpbQ60649 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
ClpbQ60649 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ClpbQ60649 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC18.82■□□□□ 0.6
ClpbQ60649 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ClpbQ60649 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ClpbQ60649 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ClpbQ60649 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ClpbQ60649 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ClpbQ60649 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ClpbQ60649 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ClpbQ60649 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ClpbQ60649 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms