Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 Gm26833-201ENSMUST00000180899 440 ntBASIC20.94■□□□□ 0.94
Shmt1P50431 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 Gm40848-201ENSMUST00000221998 324 ntBASIC20.94■□□□□ 0.94
Shmt1P50431 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shmt1P50431 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Shmt1P50431 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.93■□□□□ 0.94
Shmt1P50431 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Shmt1P50431 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Gm18284-201ENSMUST00000172604 624 ntBASIC20.93■□□□□ 0.94
Shmt1P50431 Gm8495-201ENSMUST00000188740 694 ntBASIC20.93■□□□□ 0.94
Shmt1P50431 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.93■□□□□ 0.94
Shmt1P50431 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Shmt1P50431 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Shmt1P50431 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shmt1P50431 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Shmt1P50431 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shmt1P50431 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Shmt1P50431 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Shmt1P50431 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Shmt1P50431 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Shmt1P50431 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shmt1P50431 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Shmt1P50431 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shmt1P50431 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Shmt1P50431 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shmt1P50431 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Shmt1P50431 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shmt1P50431 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.91■□□□□ 0.94
Shmt1P50431 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shmt1P50431 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Shmt1P50431 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Shmt1P50431 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.9■□□□□ 0.94
Shmt1P50431 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shmt1P50431 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.9■□□□□ 0.94
Shmt1P50431 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shmt1P50431 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Shmt1P50431 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shmt1P50431 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.9■□□□□ 0.94
Shmt1P50431 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.9■□□□□ 0.94
Shmt1P50431 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.9■□□□□ 0.94
Shmt1P50431 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shmt1P50431 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Shmt1P50431 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Shmt1P50431 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Shmt1P50431 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
Shmt1P50431 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Shmt1P50431 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Shmt1P50431 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Shmt1P50431 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Shmt1P50431 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Shmt1P50431 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.88■□□□□ 0.93
Shmt1P50431 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shmt1P50431 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
Shmt1P50431 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.88■□□□□ 0.93
Shmt1P50431 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shmt1P50431 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shmt1P50431 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shmt1P50431 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.88■□□□□ 0.93
Shmt1P50431 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Shmt1P50431 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Shmt1P50431 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Shmt1P50431 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Shmt1P50431 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Shmt1P50431 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Shmt1P50431 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.87■□□□□ 0.93
Shmt1P50431 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Shmt1P50431 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Shmt1P50431 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Shmt1P50431 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Shmt1P50431 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shmt1P50431 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shmt1P50431 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shmt1P50431 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Shmt1P50431 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shmt1P50431 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shmt1P50431 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Shmt1P50431 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shmt1P50431 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shmt1P50431 Gm43060-201ENSMUST00000200621 289 ntBASIC20.85■□□□□ 0.93
Shmt1P50431 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shmt1P50431 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shmt1P50431 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.85■□□□□ 0.93
Shmt1P50431 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms