Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Clk4O35493 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Clk4O35493 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk4O35493 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.81■□□□□ 0.6
Clk4O35493 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk4O35493 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Clk4O35493 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk4O35493 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk4O35493 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Clk4O35493 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Clk4O35493 Gm27454-201ENSMUST00000185090 204 ntBASIC18.8■□□□□ 0.6
Clk4O35493 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.8■□□□□ 0.6
Clk4O35493 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk4O35493 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.8■□□□□ 0.6
Clk4O35493 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Clk4O35493 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk4O35493 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.8■□□□□ 0.6
Clk4O35493 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk4O35493 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk4O35493 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Clk4O35493 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk4O35493 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk4O35493 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk4O35493 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Clk4O35493 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.79■□□□□ 0.6
Clk4O35493 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Clk4O35493 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.79■□□□□ 0.6
Clk4O35493 Gm43137-201ENSMUST00000198052 594 ntBASIC18.79■□□□□ 0.6
Clk4O35493 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Clk4O35493 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Clk4O35493 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk4O35493 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk4O35493 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Clk4O35493 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk4O35493 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk4O35493 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
Clk4O35493 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk4O35493 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.78■□□□□ 0.6
Clk4O35493 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Clk4O35493 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Clk4O35493 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Clk4O35493 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk4O35493 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Clk4O35493 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Clk4O35493 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk4O35493 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk4O35493 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk4O35493 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk4O35493 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clk4O35493 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clk4O35493 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Clk4O35493 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk4O35493 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.75■□□□□ 0.59
Clk4O35493 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Clk4O35493 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Clk4O35493 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.75■□□□□ 0.59
Clk4O35493 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk4O35493 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Clk4O35493 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 129.5 ms