Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.43■□□□□ 0.7
Chd3B1AR17 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Chd3B1AR17 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Chd3B1AR17 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Chd3B1AR17 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Chd3B1AR17 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC19.43■□□□□ 0.7
Chd3B1AR17 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Chd3B1AR17 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Chd3B1AR17 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.42■□□□□ 0.7
Chd3B1AR17 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Chd3B1AR17 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.42■□□□□ 0.7
Chd3B1AR17 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.42■□□□□ 0.7
Chd3B1AR17 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC19.42■□□□□ 0.7
Chd3B1AR17 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.42■□□□□ 0.7
Chd3B1AR17 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Chd3B1AR17 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chd3B1AR17 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chd3B1AR17 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chd3B1AR17 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chd3B1AR17 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Chd3B1AR17 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chd3B1AR17 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Chd3B1AR17 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chd3B1AR17 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chd3B1AR17 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chd3B1AR17 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.4■□□□□ 0.7
Chd3B1AR17 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC19.4■□□□□ 0.7
Chd3B1AR17 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.4■□□□□ 0.7
Chd3B1AR17 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Chd3B1AR17 Gm42642-201ENSMUST00000200683 355 ntBASIC19.4■□□□□ 0.7
Chd3B1AR17 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.4■□□□□ 0.7
Chd3B1AR17 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.4■□□□□ 0.7
Chd3B1AR17 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Chd3B1AR17 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Chd3B1AR17 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Chd3B1AR17 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.39■□□□□ 0.69
Chd3B1AR17 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chd3B1AR17 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.39■□□□□ 0.69
Chd3B1AR17 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.39■□□□□ 0.69
Chd3B1AR17 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.39■□□□□ 0.69
Chd3B1AR17 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Chd3B1AR17 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chd3B1AR17 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chd3B1AR17 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chd3B1AR17 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Chd3B1AR17 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Chd3B1AR17 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.38■□□□□ 0.69
Chd3B1AR17 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chd3B1AR17 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Chd3B1AR17 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
Chd3B1AR17 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chd3B1AR17 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.37■□□□□ 0.69
Chd3B1AR17 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chd3B1AR17 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chd3B1AR17 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.37■□□□□ 0.69
Chd3B1AR17 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chd3B1AR17 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.37■□□□□ 0.69
Chd3B1AR17 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chd3B1AR17 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Chd3B1AR17 Gm27405-201ENSMUST00000184201 112 ntBASIC19.36■□□□□ 0.69
Chd3B1AR17 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.36■□□□□ 0.69
Chd3B1AR17 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.36■□□□□ 0.69
Chd3B1AR17 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Chd3B1AR17 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chd3B1AR17 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chd3B1AR17 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Chd3B1AR17 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chd3B1AR17 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chd3B1AR17 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.36■□□□□ 0.69
Chd3B1AR17 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chd3B1AR17 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
Chd3B1AR17 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.35■□□□□ 0.69
Chd3B1AR17 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Chd3B1AR17 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Chd3B1AR17 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chd3B1AR17 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms