Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Hmgb2-201ENSMUST00000067925 2628 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Acvr1-203ENSMUST00000112599 2891 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Pfkm-201ENSMUST00000051226 2880 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm10406-201ENSMUST00000100895 1813 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Cngb1-204ENSMUST00000121162 3336 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Spaca3-201ENSMUST00000103222 831 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Msrb1-202ENSMUST00000115262 886 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm13303-201ENSMUST00000117125 1284 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm12606-202ENSMUST00000129527 1184 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Fbxo16-201ENSMUST00000169656 1019 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Pid1-205ENSMUST00000176720 450 ntTSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm9625-201ENSMUST00000180422 955 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm26978-201ENSMUST00000182843 304 ntTSL 3 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm18801-201ENSMUST00000186616 536 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm37452-201ENSMUST00000194416 1160 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm5870-201ENSMUST00000196461 282 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Tmprss11c-202ENSMUST00000196462 1257 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm43244-201ENSMUST00000196994 1285 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm6426-201ENSMUST00000209048 854 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm9619-201ENSMUST00000211587 762 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Madcam1-202ENSMUST00000217748 944 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 AC102569.1-204ENSMUST00000222816 793 ntTSL 3 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Proca1-202ENSMUST00000078099 1254 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm45076-201ENSMUST00000207517 1517 ntTSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Krba1-208ENSMUST00000203371 4000 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Inpp4b-212ENSMUST00000215332 5486 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 AC124426.1-201ENSMUST00000220871 2707 ntTSL 2 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Traip-201ENSMUST00000049348 2706 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gm31763-202ENSMUST00000218205 1724 ntBASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gas7-202ENSMUST00000108680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Trib2-201ENSMUST00000020922 4198 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Clic5-201ENSMUST00000024755 5870 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Ezr-201ENSMUST00000064234 3164 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Cspp1-201ENSMUST00000071087 4355 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Acsl6-203ENSMUST00000072178 2432 ntAPPRIS P5 TSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Tcn2-205ENSMUST00000109991 1943 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Plscr2-205ENSMUST00000180154 1900 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Adcy3-201ENSMUST00000020984 4348 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 St6galnac2-206ENSMUST00000144398 1683 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Ccdc186-202ENSMUST00000118592 6445 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Dido1-205ENSMUST00000103056 4281 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Smok3a-202ENSMUST00000171498 2327 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Ttll2-201ENSMUST00000115747 1623 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Clrn1Q8K445 Adra1a-205ENSMUST00000161339 2788 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Sun1-201ENSMUST00000058716 4134 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Zscan21-203ENSMUST00000110959 2964 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Tmem126b-201ENSMUST00000032843 2259 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm8446-201ENSMUST00000188834 2712 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Lgals9-203ENSMUST00000108269 1586 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Dffa-201ENSMUST00000030816 2457 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 5730596B20Rik-201ENSMUST00000070587 3354 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 St5-202ENSMUST00000079282 4255 ntAPPRIS P4 TSL 5 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 2410002F23Rik-202ENSMUST00000071296 4201 ntAPPRIS P2 TSL 2 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Ppid-201ENSMUST00000029382 1752 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gba-201ENSMUST00000077367 1779 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 4930447F24Rik-201ENSMUST00000194140 1341 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm8848-201ENSMUST00000197270 1343 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Mgme1-201ENSMUST00000028910 2840 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Phka2-204ENSMUST00000112380 4341 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Pde4d-209ENSMUST00000122041 2554 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Il18bp-202ENSMUST00000209368 2596 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Tyw3-201ENSMUST00000052774 4490 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Ak3l2-ps-201ENSMUST00000120282 672 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm12916-201ENSMUST00000139012 948 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 0610040B10Rik-202ENSMUST00000162890 600 ntTSL 5 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm27956-201ENSMUST00000175604 260 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm5808-201ENSMUST00000178090 357 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm6291-201ENSMUST00000179994 309 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm37872-201ENSMUST00000192362 886 ntTSL 5 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm37976-201ENSMUST00000193827 345 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm10829-201ENSMUST00000202084 2988 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm44939-201ENSMUST00000206939 814 ntTSL 3 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm2448-201ENSMUST00000207080 559 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm35239-201ENSMUST00000218346 487 ntTSL 3 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Ascl3-201ENSMUST00000035372 700 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm10580-201ENSMUST00000097985 396 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm10582-201ENSMUST00000097987 396 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Gm10583-201ENSMUST00000097988 396 ntBASIC9.63□□□□□ -0.87
Clrn1Q8K445 Mrgpra1-201ENSMUST00000098438 1088 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Tbck-202ENSMUST00000169172 6578 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 Pax5-202ENSMUST00000102932 1460 ntTSL 5 BASIC9.63□□□□□ -0.87
Clrn1Q8K445 1700022A22Rik-202ENSMUST00000187130 1458 ntTSL 5 BASIC9.63□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms