Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Apobec3-205ENSMUST00000175752 1977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Cacna2d1-204ENSMUST00000115281 3412 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Hivep1-201ENSMUST00000060148 8753 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Ncf2-201ENSMUST00000027754 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Lin54-209ENSMUST00000152387 2760 ntTSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Ntrk3-206ENSMUST00000195262 2774 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Mrpl24-202ENSMUST00000119968 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Gm7742-201ENSMUST00000167648 1527 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Gm7732-201ENSMUST00000170486 1527 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Gm7740-201ENSMUST00000186171 1527 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Gm7736-201ENSMUST00000096981 1527 ntBASIC11.92□□□□□ -0.5
Traf1P39428 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Helz-202ENSMUST00000100305 5953 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Rapgef4os2-201ENSMUST00000128165 2116 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Ogfod1-202ENSMUST00000093301 5141 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Cep112-201ENSMUST00000061287 3485 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Tacr1-201ENSMUST00000032122 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Zfp330-201ENSMUST00000034147 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Galntl5-202ENSMUST00000114965 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Urod-201ENSMUST00000030446 1489 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Gm23604-201ENSMUST00000104311 132 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Wfdc3-202ENSMUST00000109328 726 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Rpsa-ps5-201ENSMUST00000121462 885 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Gm15793-201ENSMUST00000121857 495 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Gm16227-201ENSMUST00000160088 563 ntTSL 3 BASIC11.92□□□□□ -0.5
Traf1P39428 Gm16581-201ENSMUST00000160730 991 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Rps18-206ENSMUST00000174609 527 ntTSL 2 BASIC11.92□□□□□ -0.5
Traf1P39428 Gm5335-201ENSMUST00000182995 1000 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Marc1-203ENSMUST00000189492 1239 ntTSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Gm8525-201ENSMUST00000189674 861 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC11.92□□□□□ -0.5
Traf1P39428 Gm21149-201ENSMUST00000197995 1212 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 E330011O21Rik-205ENSMUST00000211317 1062 ntTSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Pcbd1-202ENSMUST00000218005 361 ntTSL 3 BASIC11.92□□□□□ -0.5
Traf1P39428 AC132384.2-201ENSMUST00000218018 526 ntBASIC11.92□□□□□ -0.5
Traf1P39428 AC174647.1-201ENSMUST00000227419 1271 ntBASIC11.92□□□□□ -0.5
Traf1P39428 AC156016.4-201ENSMUST00000227470 647 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Vcan-202ENSMUST00000109544 5702 ntTSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
Traf1P39428 5730403I07Rik-201ENSMUST00000183878 2033 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Gm40634-201ENSMUST00000214129 2001 ntTSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Zfp959-201ENSMUST00000054780 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Fcrl1-202ENSMUST00000163661 1649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Med24-202ENSMUST00000100500 3133 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Avil-203ENSMUST00000129173 2925 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Sqor-202ENSMUST00000110506 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Plekha7-206ENSMUST00000182487 3476 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Traf1P39428 Gm26658-201ENSMUST00000181067 2500 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 A930003O13Rik-202ENSMUST00000197486 3098 ntBASIC11.92□□□□□ -0.5
Traf1P39428 Zfp710-203ENSMUST00000166250 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Gm45699-201ENSMUST00000212838 1576 ntTSL 2 BASIC11.92□□□□□ -0.5
Traf1P39428 Gm8016-201ENSMUST00000221830 1575 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Adcy6-205ENSMUST00000228566 3707 ntAPPRIS ALT1 BASIC11.91□□□□□ -0.5
Traf1P39428 Eif2ak4-203ENSMUST00000110869 1715 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Lrrc49-204ENSMUST00000114034 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Elovl5-201ENSMUST00000034904 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Pld5-203ENSMUST00000111167 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Ncam1-201ENSMUST00000114476 2567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm27177-201ENSMUST00000183339 2946 ntTSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 St6galnac4-201ENSMUST00000102818 3626 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm8848-201ENSMUST00000197270 1343 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Ephb4-202ENSMUST00000111054 3784 ntTSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Elmod3-202ENSMUST00000114069 2164 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Gm7190-201ENSMUST00000118669 1452 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Amd-ps3-201ENSMUST00000072796 1496 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Shank2-201ENSMUST00000097929 4418 ntTSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Cdkl2-202ENSMUST00000086978 4066 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Atxn7l3-203ENSMUST00000107134 3712 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Abca2-201ENSMUST00000102919 8033 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Nphs1-203ENSMUST00000126297 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm11569-201ENSMUST00000105057 869 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Traf1P39428 Gm9166-201ENSMUST00000120293 561 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Gm12207-201ENSMUST00000143016 494 ntTSL 2 BASIC11.91□□□□□ -0.5
Traf1P39428 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm15506-201ENSMUST00000148776 1133 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm16574-201ENSMUST00000159301 745 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC11.91□□□□□ -0.5
Traf1P39428 AC124613.1-201ENSMUST00000198711 88 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Hs1bp3-201ENSMUST00000020927 2959 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm31941-201ENSMUST00000209689 350 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC11.91□□□□□ -0.5
Traf1P39428 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Hax1-201ENSMUST00000079724 1139 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Lamb1-201ENSMUST00000002979 5784 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 Gm32914-201ENSMUST00000203815 2228 ntBASIC11.91□□□□□ -0.5
Traf1P39428 Btc-201ENSMUST00000121044 2876 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Traf1P39428 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Traf1P39428 Supt16-201ENSMUST00000046709 4673 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms