Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm11411-201ENSMUST00000117951 719 ntBASIC12.03□□□□□ -0.48
Traf1P39428 Rplp0-ps1-201ENSMUST00000122125 933 ntBASIC12.03□□□□□ -0.48
Traf1P39428 Gm6471-202ENSMUST00000148734 587 ntTSL 2 BASIC12.03□□□□□ -0.48
Traf1P39428 Eif4e1b-210ENSMUST00000152204 859 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Gm16228-201ENSMUST00000162286 809 ntBASIC12.03□□□□□ -0.48
Traf1P39428 Tex33-203ENSMUST00000169575 942 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Traf1P39428 9230114K14Rik-202ENSMUST00000198720 837 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Gm7319-201ENSMUST00000210047 778 ntBASIC12.03□□□□□ -0.48
Traf1P39428 Gm19090-201ENSMUST00000218187 774 ntBASIC12.03□□□□□ -0.48
Traf1P39428 AC159261.1-201ENSMUST00000222493 911 ntTSL 2 BASIC12.03□□□□□ -0.48
Traf1P39428 AC154759.1-201ENSMUST00000224137 1159 ntBASIC12.03□□□□□ -0.48
Traf1P39428 Mrps14-202ENSMUST00000097193 787 ntTSL 2 BASIC12.03□□□□□ -0.48
Traf1P39428 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC12.03□□□□□ -0.48
Traf1P39428 Gm38048-201ENSMUST00000193778 2174 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Abcb8-203ENSMUST00000115077 3074 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Traf1P39428 Atf3-203ENSMUST00000195117 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Traf1P39428 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Gm38034-201ENSMUST00000193915 2069 ntBASIC12.02□□□□□ -0.48
Traf1P39428 Slc35b3-201ENSMUST00000021870 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Gal3st2b-202ENSMUST00000178757 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Slc7a3-203ENSMUST00000113710 2750 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Traf1P39428 Nrbp2-201ENSMUST00000019516 2495 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Vmn1r16-203ENSMUST00000228356 3492 ntAPPRIS ALT2 BASIC12.02□□□□□ -0.48
Traf1P39428 Gpm6b-209ENSMUST00000112235 4480 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Cyp7b1-201ENSMUST00000035625 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Gm45076-201ENSMUST00000207517 1517 ntTSL 5 BASIC12.02□□□□□ -0.48
Traf1P39428 Tcaf1-202ENSMUST00000045140 5256 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Fam13c-201ENSMUST00000062883 3262 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Traf1P39428 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Gramd1b-213ENSMUST00000211853 2659 ntTSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Morf4l2-201ENSMUST00000033797 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Bpifb1-201ENSMUST00000028987 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Gm14148-201ENSMUST00000122433 1008 ntBASIC12.02□□□□□ -0.49
Traf1P39428 Gm14798-201ENSMUST00000139695 1189 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Gm12927-201ENSMUST00000150252 373 ntTSL 2 BASIC12.02□□□□□ -0.49
Traf1P39428 Gm24294-201ENSMUST00000158295 277 ntBASIC12.02□□□□□ -0.49
Traf1P39428 Rab26-204ENSMUST00000176533 965 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Gm28179-201ENSMUST00000188365 613 ntBASIC12.02□□□□□ -0.49
Traf1P39428 Gm28079-206ENSMUST00000188554 1170 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 4930517L18Rik-201ENSMUST00000191880 482 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 0610033M10Rik-202ENSMUST00000205236 1102 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 AC103672.1-201ENSMUST00000227502 365 ntBASIC12.02□□□□□ -0.49
Traf1P39428 Klk1b24-201ENSMUST00000073713 878 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Fcer1g-201ENSMUST00000079957 674 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Klk1b21-201ENSMUST00000085455 871 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC12.02□□□□□ -0.49
Traf1P39428 Cit-212ENSMUST00000141101 6794 ntTSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Tnk2-204ENSMUST00000115123 4225 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Bsdc1-201ENSMUST00000048162 2823 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Gm8036-201ENSMUST00000118089 1718 ntBASIC12.02□□□□□ -0.49
Traf1P39428 Sfxn5-201ENSMUST00000045846 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Plekhg5-201ENSMUST00000084115 4113 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Traf1P39428 Tpd52-202ENSMUST00000091354 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Gm6713-201ENSMUST00000216137 1446 ntBASIC12.02□□□□□ -0.49
Traf1P39428 Fcamr-202ENSMUST00000112477 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Bzw2-201ENSMUST00000020856 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Ikbkb-201ENSMUST00000033939 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Traf1P39428 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Traf1P39428 Mitf-201ENSMUST00000043628 1921 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Apobec3-204ENSMUST00000175714 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 C1rb-201ENSMUST00000184647 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Gm11735-201ENSMUST00000106377 1581 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Rps24-210ENSMUST00000225023 1613 ntAPPRIS P4 BASIC12.01□□□□□ -0.49
Traf1P39428 Gm43372-201ENSMUST00000202662 3016 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm45170-201ENSMUST00000206746 1671 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Bcl7a-202ENSMUST00000117971 4642 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Bace2-201ENSMUST00000047275 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Gm22582-201ENSMUST00000102283 94 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Mrps36-203ENSMUST00000109333 701 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Il15ra-203ENSMUST00000114831 882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Gm13426-201ENSMUST00000117887 795 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm11929-201ENSMUST00000118175 945 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm15636-201ENSMUST00000119205 668 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gng5-ps-201ENSMUST00000120931 205 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm12009-201ENSMUST00000121361 1100 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Gm15341-201ENSMUST00000137315 592 ntTSL 3 BASIC12.01□□□□□ -0.49
Traf1P39428 Gm15839-201ENSMUST00000138684 612 ntTSL 3 BASIC12.01□□□□□ -0.49
Traf1P39428 Gm14341-201ENSMUST00000154616 667 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Gm17120-201ENSMUST00000164734 743 ntTSL 3 BASIC12.01□□□□□ -0.49
Traf1P39428 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC12.01□□□□□ -0.49
Traf1P39428 1700085C21Rik-201ENSMUST00000187123 1082 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Traf1P39428 Gm37141-201ENSMUST00000191938 422 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm19566-201ENSMUST00000199576 610 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm5738-201ENSMUST00000206016 779 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm45363-201ENSMUST00000210196 1294 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm45310-201ENSMUST00000210436 275 ntBASIC12.01□□□□□ -0.49
Traf1P39428 Gm7904-201ENSMUST00000217049 465 ntBASIC12.01□□□□□ -0.49
Traf1P39428 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC12.01□□□□□ -0.49
Traf1P39428 AC122824.1-201ENSMUST00000221705 828 ntTSL 3 BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms