Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Enthd1-201ENSMUST00000096347 2110 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Rac2-201ENSMUST00000043214 3036 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Taok3-201ENSMUST00000092889 4354 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 March1-206ENSMUST00000110256 3288 ntTSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm15784-201ENSMUST00000120260 1462 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Nin-202ENSMUST00000085314 9675 ntAPPRIS P4 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Cdc25b-201ENSMUST00000028804 3089 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Ddhd2-201ENSMUST00000033975 4245 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Bcas3-205ENSMUST00000108061 3810 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Lypla1-202ENSMUST00000115529 930 ntTSL 2 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm12389-201ENSMUST00000117696 418 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm13328-201ENSMUST00000120816 1020 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm11988-201ENSMUST00000122321 1069 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Smim6-201ENSMUST00000132961 978 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm7584-201ENSMUST00000175829 940 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm37905-201ENSMUST00000195310 341 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm37826-201ENSMUST00000195329 322 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm7047-201ENSMUST00000196224 1063 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm30946-201ENSMUST00000198288 724 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm44270-201ENSMUST00000203084 1234 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm5881-201ENSMUST00000204737 367 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm5369-201ENSMUST00000217499 588 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Olfr414-201ENSMUST00000053178 955 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Olfr169-201ENSMUST00000090062 942 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Sppl2c-202ENSMUST00000107000 2225 ntAPPRIS P4 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Sppl2c-201ENSMUST00000059448 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Hsd3b5-201ENSMUST00000044094 1549 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Celf3-215ENSMUST00000200342 3173 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Susd2-202ENSMUST00000095541 3151 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Scml2-202ENSMUST00000074802 3440 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Depdc5-204ENSMUST00000119705 7929 ntAPPRIS P2 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Tnxa-201ENSMUST00000173277 2975 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Nrxn1-225ENSMUST00000197268 2280 ntTSL 3 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Stxbp5l-203ENSMUST00000114780 3476 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm6641-201ENSMUST00000196100 1315 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Bbs9-209ENSMUST00000147405 3045 ntAPPRIS ALT1 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm8016-201ENSMUST00000221830 1575 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Prim1-201ENSMUST00000026461 1583 ntAPPRIS P2 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Src-205ENSMUST00000109533 3813 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
Hmgb3O54879 Med24-202ENSMUST00000100500 3133 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Stxbp5l-206ENSMUST00000114787 4394 ntAPPRIS P3 TSL 5 BASIC8.47□□□□□ -1.05
Hmgb3O54879 Gm44741-201ENSMUST00000207503 2127 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 5430430B14Rik-201ENSMUST00000209427 1630 ntBASIC8.47□□□□□ -1.05
Hmgb3O54879 Hs1bp3-201ENSMUST00000020927 2959 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
Hmgb3O54879 Gm46218-202ENSMUST00000215520 1956 ntBASIC8.46□□□□□ -1.05
Hmgb3O54879 Zfp462-203ENSMUST00000098070 10465 ntAPPRIS P2 TSL 5 BASIC8.46□□□□□ -1.05
Hmgb3O54879 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
Hmgb3O54879 Pitrm1-207ENSMUST00000222485 3906 ntAPPRIS P2 TSL 1 (best) BASIC8.46□□□□□ -1.05
Hmgb3O54879 Zfp54-201ENSMUST00000007884 2300 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
Hmgb3O54879 Gm44510-201ENSMUST00000206288 4532 ntBASIC8.46□□□□□ -1.05
Hmgb3O54879 4632411P08Rik-201ENSMUST00000181005 3237 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Klrc2-202ENSMUST00000112057 1149 ntAPPRIS P4 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Bex3-203ENSMUST00000113113 766 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm16481-201ENSMUST00000119074 1227 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Tspan2-202ENSMUST00000119902 961 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm12266-201ENSMUST00000120311 962 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm15271-201ENSMUST00000134627 2110 ntTSL 5 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm4819-201ENSMUST00000182170 1009 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm42780-201ENSMUST00000197083 734 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm5599-201ENSMUST00000209602 788 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm7395-201ENSMUST00000216059 1045 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm19046-201ENSMUST00000221263 1298 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 AC159196.1-201ENSMUST00000225524 377 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Nat8f5-201ENSMUST00000032074 986 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Ankrd6-201ENSMUST00000035719 4683 ntAPPRIS P2 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Ptk2-209ENSMUST00000226988 4444 ntAPPRIS ALT1 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Cntrl-201ENSMUST00000028235 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Myt1-201ENSMUST00000081125 5327 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Ncaph2-203ENSMUST00000088717 3302 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Rsrc1-201ENSMUST00000046542 3062 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Olfm4-203ENSMUST00000228749 2801 ntAPPRIS P1 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Ccdc136-209ENSMUST00000181464 3444 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Pde4d-202ENSMUST00000079975 2280 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms