Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Olfr764-ps1-201ENSMUST00000204763 2854 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Zfp280d-211ENSMUST00000184036 3459 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Tuft1-204ENSMUST00000196733 2555 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Mkl1-204ENSMUST00000134469 4392 ntTSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Gm45397-201ENSMUST00000209816 1600 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 AC115891.3-201ENSMUST00000219161 2472 ntBASIC12.09□□□□□ -0.47
Traf1P39428 Scamp1-203ENSMUST00000152555 1877 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 St7-204ENSMUST00000077080 1887 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Hist1h4i-201ENSMUST00000102977 727 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Traf1P39428 Rab29-202ENSMUST00000112386 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Rpl10a-ps1-201ENSMUST00000120360 654 ntBASIC12.09□□□□□ -0.47
Traf1P39428 Gm16322-202ENSMUST00000141275 700 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Mir1941-201ENSMUST00000157834 83 ntBASIC12.09□□□□□ -0.47
Traf1P39428 Gm16268-201ENSMUST00000159445 1157 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 1500015A07Rik-202ENSMUST00000184530 423 ntTSL 3 BASIC12.09□□□□□ -0.47
Traf1P39428 Gm37858-201ENSMUST00000192759 1231 ntBASIC12.09□□□□□ -0.47
Traf1P39428 Gm42493-201ENSMUST00000197559 1121 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Haao-201ENSMUST00000000687 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Tas2r135-201ENSMUST00000070178 1093 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Traf1P39428 Gm5148-201ENSMUST00000079755 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 4933408B17Rik-201ENSMUST00000056932 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Traf1P39428 Slc25a44-203ENSMUST00000193433 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Traf1P39428 Atxn1l-202ENSMUST00000212605 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Hk3-201ENSMUST00000052949 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Foxm1-202ENSMUST00000112148 2229 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Tnfsf13b-203ENSMUST00000207792 4771 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Vamp5-203ENSMUST00000206154 2619 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Traf1P39428 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
Traf1P39428 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Duxbl1-201ENSMUST00000049793 2266 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Gm10537-201ENSMUST00000192625 1698 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Traf1P39428 1700025C18Rik-201ENSMUST00000109304 702 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Slc25a21-202ENSMUST00000110680 918 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 Gm25604-201ENSMUST00000158359 133 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Tmem229b-ps-201ENSMUST00000168554 506 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Gm25998-201ENSMUST00000175397 53 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Gm4705-201ENSMUST00000177415 354 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Gal3st2b-201ENSMUST00000177958 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Mir124-2hg-203ENSMUST00000186923 673 ntTSL 3 BASIC12.08□□□□□ -0.48
Traf1P39428 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC12.08□□□□□ -0.48
Traf1P39428 Fkbp6-202ENSMUST00000201534 1287 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Gm44388-201ENSMUST00000204350 258 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 Gm31786-201ENSMUST00000212305 564 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 AC140314.1-201ENSMUST00000219549 554 ntBASIC12.08□□□□□ -0.48
Traf1P39428 CAAA01139602.1-201ENSMUST00000222545 283 ntBASIC12.08□□□□□ -0.48
Traf1P39428 AC139155.1-201ENSMUST00000226043 444 ntBASIC12.08□□□□□ -0.48
Traf1P39428 AC154213.1-201ENSMUST00000228234 583 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Gm22341-201ENSMUST00000083775 129 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Epb41-202ENSMUST00000054917 4948 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 AC154186.1-201ENSMUST00000227711 1597 ntBASIC12.08□□□□□ -0.48
Traf1P39428 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Morf4l2-213ENSMUST00000166478 1720 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Traf1P39428 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Sdk1-201ENSMUST00000074546 7063 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Gstm4-203ENSMUST00000178808 1462 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Micalcl-203ENSMUST00000106645 2309 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Traf1P39428 Cnga4-201ENSMUST00000033187 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Traf1P39428 Tcn2-206ENSMUST00000109992 1945 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC12.07□□□□□ -0.48
Traf1P39428 Nampt-201ENSMUST00000020886 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Pofut1-207ENSMUST00000152390 4833 ntTSL 2 BASIC12.07□□□□□ -0.48
Traf1P39428 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Ccdc24-206ENSMUST00000164853 3990 ntTSL 2 BASIC12.07□□□□□ -0.48
Traf1P39428 Mlc1-202ENSMUST00000109368 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC12.07□□□□□ -0.48
Traf1P39428 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Traf1P39428 Unc45a-202ENSMUST00000107368 3635 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Traf1P39428 Gm12337-201ENSMUST00000119634 400 ntBASIC12.07□□□□□ -0.48
Traf1P39428 Gm16048-201ENSMUST00000134250 663 ntTSL 3 BASIC12.07□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms