Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
Scn11aQ9R053 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Scn11aQ9R053 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
Scn11aQ9R053 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Scn11aQ9R053 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Scn11aQ9R053 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Scn11aQ9R053 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Scn11aQ9R053 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Scn11aQ9R053 Gm22325-201ENSMUST00000158904 308 ntBASIC23.91■■□□□ 1.42
Scn11aQ9R053 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Scn11aQ9R053 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC23.9■■□□□ 1.42
Scn11aQ9R053 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
Scn11aQ9R053 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Scn11aQ9R053 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Scn11aQ9R053 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Scn11aQ9R053 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Scn11aQ9R053 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Scn11aQ9R053 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Scn11aQ9R053 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Scn11aQ9R053 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Scn11aQ9R053 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Scn11aQ9R053 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Scn11aQ9R053 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Scn11aQ9R053 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Scn11aQ9R053 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Scn11aQ9R053 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Gm18671-201ENSMUST00000214826 683 ntBASIC23.88■■□□□ 1.41
Scn11aQ9R053 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
Scn11aQ9R053 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Scn11aQ9R053 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
Scn11aQ9R053 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Scn11aQ9R053 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Scn11aQ9R053 AV356131-201ENSMUST00000206201 750 ntBASIC23.86■■□□□ 1.41
Scn11aQ9R053 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Scn11aQ9R053 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Scn11aQ9R053 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Scn11aQ9R053 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Scn11aQ9R053 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC23.85■■□□□ 1.41
Scn11aQ9R053 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Scn11aQ9R053 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.84■■□□□ 1.41
Scn11aQ9R053 Snhg20-203ENSMUST00000182811 2153 ntBASIC23.84■■□□□ 1.41
Scn11aQ9R053 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Scn11aQ9R053 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Scn11aQ9R053 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC23.84■■□□□ 1.41
Scn11aQ9R053 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC23.84■■□□□ 1.41
Scn11aQ9R053 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Scn11aQ9R053 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC23.84■■□□□ 1.41
Scn11aQ9R053 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Scn11aQ9R053 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Scn11aQ9R053 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Scn11aQ9R053 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
Scn11aQ9R053 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms