Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Slc35b2-207ENSMUST00000226086 850 ntBASIC21.98■■□□□ 1.11
Smc1aQ9CU62 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Smc1aQ9CU62 Gm6139-201ENSMUST00000079261 882 ntBASIC21.98■■□□□ 1.11
Smc1aQ9CU62 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Smc1aQ9CU62 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Smc1aQ9CU62 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Smc1aQ9CU62 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Gm18284-201ENSMUST00000172604 624 ntBASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Gm43137-201ENSMUST00000198052 594 ntBASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.96■■□□□ 1.11
Smc1aQ9CU62 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.11
Smc1aQ9CU62 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Smc1aQ9CU62 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Smc1aQ9CU62 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Smc1aQ9CU62 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Smc1aQ9CU62 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Smc1aQ9CU62 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Mir7075-201ENSMUST00000184187 82 ntBASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Smc1aQ9CU62 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms