Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.06■□□□□ 0.96
Sf3b1Q99NB9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.06■□□□□ 0.96
Sf3b1Q99NB9 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Gm42569-201ENSMUST00000200539 472 ntBASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Gm42642-201ENSMUST00000200683 355 ntBASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Sf3b1Q99NB9 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Gm7291-201ENSMUST00000199147 382 ntBASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sf3b1Q99NB9 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Sf3b1Q99NB9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.03■□□□□ 0.96
Sf3b1Q99NB9 Gm26571-201ENSMUST00000181399 666 ntBASIC21.03■□□□□ 0.96
Sf3b1Q99NB9 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sf3b1Q99NB9 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sf3b1Q99NB9 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sf3b1Q99NB9 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.02■□□□□ 0.96
Sf3b1Q99NB9 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sf3b1Q99NB9 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sf3b1Q99NB9 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Sf3b1Q99NB9 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Sf3b1Q99NB9 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Sf3b1Q99NB9 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.02■□□□□ 0.95
Sf3b1Q99NB9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Sf3b1Q99NB9 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Sf3b1Q99NB9 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.01■□□□□ 0.95
Sf3b1Q99NB9 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sf3b1Q99NB9 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21■□□□□ 0.95
Sf3b1Q99NB9 Hsf1-207ENSMUST00000228371 2102 ntBASIC21■□□□□ 0.95
Sf3b1Q99NB9 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sf3b1Q99NB9 Gm27405-201ENSMUST00000184201 112 ntBASIC21■□□□□ 0.95
Sf3b1Q99NB9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Gm10849-201ENSMUST00000100397 618 ntBASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Gm18671-201ENSMUST00000214826 683 ntBASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Sf3b1Q99NB9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sf3b1Q99NB9 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.97■□□□□ 0.95
Sf3b1Q99NB9 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Sf3b1Q99NB9 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Sf3b1Q99NB9 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.95■□□□□ 0.94
Sf3b1Q99NB9 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.95■□□□□ 0.94
Sf3b1Q99NB9 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sf3b1Q99NB9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sf3b1Q99NB9 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms