Protein–RNA interactions for Protein: Q6NSQ5

Sp140, Sp140 nuclear body protein, mousemouse

Predictions only

Length 534 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sp140Q6NSQ5 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sp140Q6NSQ5 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sp140Q6NSQ5 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.15■□□□□ 0.82
Sp140Q6NSQ5 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Sp140Q6NSQ5 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sp140Q6NSQ5 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.15■□□□□ 0.82
Sp140Q6NSQ5 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.15■□□□□ 0.82
Sp140Q6NSQ5 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Sp140Q6NSQ5 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Sp140Q6NSQ5 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
Sp140Q6NSQ5 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sp140Q6NSQ5 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sp140Q6NSQ5 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sp140Q6NSQ5 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Sp140Q6NSQ5 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.12■□□□□ 0.81
Sp140Q6NSQ5 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sp140Q6NSQ5 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sp140Q6NSQ5 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Iqck-206ENSMUST00000208658 2891 ntBASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sp140Q6NSQ5 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sp140Q6NSQ5 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sp140Q6NSQ5 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sp140Q6NSQ5 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sp140Q6NSQ5 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sp140Q6NSQ5 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.08■□□□□ 0.81
Sp140Q6NSQ5 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Sp140Q6NSQ5 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
Sp140Q6NSQ5 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sp140Q6NSQ5 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sp140Q6NSQ5 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Sp140Q6NSQ5 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Sp140Q6NSQ5 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sp140Q6NSQ5 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sp140Q6NSQ5 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms