Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Usf1Q61069 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Usf1Q61069 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usf1Q61069 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usf1Q61069 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usf1Q61069 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.13■□□□□ 0.49
Usf1Q61069 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usf1Q61069 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.13■□□□□ 0.49
Usf1Q61069 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usf1Q61069 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usf1Q61069 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.12■□□□□ 0.49
Usf1Q61069 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC18.12■□□□□ 0.49
Usf1Q61069 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.12■□□□□ 0.49
Usf1Q61069 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Usf1Q61069 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.12■□□□□ 0.49
Usf1Q61069 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC18.12■□□□□ 0.49
Usf1Q61069 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usf1Q61069 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Usf1Q61069 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usf1Q61069 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Usf1Q61069 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usf1Q61069 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usf1Q61069 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usf1Q61069 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Usf1Q61069 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usf1Q61069 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usf1Q61069 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usf1Q61069 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usf1Q61069 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usf1Q61069 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usf1Q61069 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usf1Q61069 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.1■□□□□ 0.49
Usf1Q61069 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.1■□□□□ 0.49
Usf1Q61069 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.1■□□□□ 0.49
Usf1Q61069 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usf1Q61069 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.09■□□□□ 0.49
Usf1Q61069 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Usf1Q61069 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Gm8520-201ENSMUST00000186517 868 ntBASIC18.09■□□□□ 0.49
Usf1Q61069 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usf1Q61069 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usf1Q61069 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usf1Q61069 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usf1Q61069 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Usf1Q61069 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.08■□□□□ 0.48
Usf1Q61069 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC18.08■□□□□ 0.48
Usf1Q61069 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Usf1Q61069 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.08■□□□□ 0.48
Usf1Q61069 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usf1Q61069 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.07■□□□□ 0.48
Usf1Q61069 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
Usf1Q61069 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usf1Q61069 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usf1Q61069 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usf1Q61069 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usf1Q61069 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.07■□□□□ 0.48
Usf1Q61069 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.07■□□□□ 0.48
Usf1Q61069 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usf1Q61069 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usf1Q61069 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usf1Q61069 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC18.07■□□□□ 0.48
Usf1Q61069 AC124392.1-201ENSMUST00000225172 5324 ntBASIC18.07■□□□□ 0.48
Usf1Q61069 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Usf1Q61069 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.06■□□□□ 0.48
Usf1Q61069 Gm10252-201ENSMUST00000209541 832 ntBASIC18.06■□□□□ 0.48
Usf1Q61069 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Usf1Q61069 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms