Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CPSF4O95639 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4O95639 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4O95639 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.1■□□□□ 0.97
CPSF4O95639 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4O95639 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.1■□□□□ 0.97
CPSF4O95639 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4O95639 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4O95639 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.1■□□□□ 0.97
CPSF4O95639 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CPSF4O95639 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4O95639 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4O95639 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.1■□□□□ 0.97
CPSF4O95639 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.09■□□□□ 0.97
CPSF4O95639 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.09■□□□□ 0.97
CPSF4O95639 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.09■□□□□ 0.97
CPSF4O95639 LINC00526-201ENST00000581067 1875 ntBASIC21.09■□□□□ 0.97
CPSF4O95639 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.09■□□□□ 0.97
CPSF4O95639 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.09■□□□□ 0.97
CPSF4O95639 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4O95639 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CPSF4O95639 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4O95639 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.08■□□□□ 0.97
CPSF4O95639 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CPSF4O95639 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4O95639 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.08■□□□□ 0.97
CPSF4O95639 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.08■□□□□ 0.97
CPSF4O95639 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.08■□□□□ 0.97
CPSF4O95639 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.08■□□□□ 0.96
CPSF4O95639 ESRRAP2-201ENST00000418437 1549 ntBASIC21.08■□□□□ 0.96
CPSF4O95639 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CPSF4O95639 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CPSF4O95639 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4O95639 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4O95639 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CPSF4O95639 LINC00565-201ENST00000562710 2331 ntBASIC21.07■□□□□ 0.96
CPSF4O95639 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4O95639 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CPSF4O95639 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4O95639 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CPSF4O95639 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4O95639 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.07■□□□□ 0.96
CPSF4O95639 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.07■□□□□ 0.96
CPSF4O95639 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.07■□□□□ 0.96
CPSF4O95639 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4O95639 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4O95639 ECEL1P1-201ENST00000373592 1742 ntBASIC21.07■□□□□ 0.96
CPSF4O95639 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.07■□□□□ 0.96
CPSF4O95639 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.06■□□□□ 0.96
CPSF4O95639 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.06■□□□□ 0.96
CPSF4O95639 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CPSF4O95639 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.06■□□□□ 0.96
CPSF4O95639 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 AC144652.1-201ENST00000609974 1624 ntBASIC21.06■□□□□ 0.96
CPSF4O95639 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4O95639 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.05■□□□□ 0.96
CPSF4O95639 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CPSF4O95639 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.05■□□□□ 0.96
CPSF4O95639 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4O95639 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.04■□□□□ 0.96
CPSF4O95639 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CPSF4O95639 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CPSF4O95639 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.04■□□□□ 0.96
CPSF4O95639 BX664725.1-201ENST00000438252 379 ntBASIC21.04■□□□□ 0.96
CPSF4O95639 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.04■□□□□ 0.96
CPSF4O95639 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
CPSF4O95639 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms