Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Nr1i3O35627 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Nr1i3O35627 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.36■■□□□ 1.01
Nr1i3O35627 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Nr1i3O35627 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Nr1i3O35627 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Nr1i3O35627 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Nr1i3O35627 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.35■■□□□ 1.01
Nr1i3O35627 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Nr1i3O35627 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.35■■□□□ 1.01
Nr1i3O35627 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Nr1i3O35627 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Nr1i3O35627 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Nr1i3O35627 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Nr1i3O35627 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.34■■□□□ 1.01
Nr1i3O35627 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.34■■□□□ 1.01
Nr1i3O35627 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.34■■□□□ 1.01
Nr1i3O35627 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Nr1i3O35627 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.33■■□□□ 1.01
Nr1i3O35627 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nr1i3O35627 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nr1i3O35627 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Nr1i3O35627 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nr1i3O35627 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Nr1i3O35627 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.33■■□□□ 1
Nr1i3O35627 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Nr1i3O35627 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Nr1i3O35627 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.32■■□□□ 1
Nr1i3O35627 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Nr1i3O35627 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nr1i3O35627 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.32■■□□□ 1
Nr1i3O35627 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
Nr1i3O35627 Gm22238-201ENSMUST00000175222 88 ntBASIC21.32■■□□□ 1
Nr1i3O35627 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nr1i3O35627 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.32■■□□□ 1
Nr1i3O35627 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.32■■□□□ 1
Nr1i3O35627 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
Nr1i3O35627 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1i3O35627 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.31■■□□□ 1
Nr1i3O35627 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1i3O35627 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1i3O35627 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.31■■□□□ 1
Nr1i3O35627 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.31■■□□□ 1
Nr1i3O35627 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
Nr1i3O35627 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1i3O35627 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1i3O35627 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nr1i3O35627 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Nr1i3O35627 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.3■■□□□ 1
Nr1i3O35627 Gm9959-201ENSMUST00000068277 390 ntBASIC21.3■■□□□ 1
Nr1i3O35627 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nr1i3O35627 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Nr1i3O35627 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nr1i3O35627 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nr1i3O35627 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.29■■□□□ 1
Nr1i3O35627 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nr1i3O35627 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Nr1i3O35627 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nr1i3O35627 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.28■■□□□ 1
Nr1i3O35627 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.28■■□□□ 1
Nr1i3O35627 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Nr1i3O35627 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC21.28■■□□□ 1
Nr1i3O35627 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Nr1i3O35627 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.28■■□□□ 1
Nr1i3O35627 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nr1i3O35627 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.28■■□□□ 1
Nr1i3O35627 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1i3O35627 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1i3O35627 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1i3O35627 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1i3O35627 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1i3O35627 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1i3O35627 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.27■■□□□ 1
Nr1i3O35627 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nr1i3O35627 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.27■■□□□ 1
Nr1i3O35627 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.27■■□□□ 1
Nr1i3O35627 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Nr1i3O35627 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.27■□□□□ 0.99
Nr1i3O35627 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Nr1i3O35627 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1i3O35627 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1i3O35627 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.26■□□□□ 0.99
Nr1i3O35627 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1i3O35627 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1i3O35627 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1i3O35627 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Nr1i3O35627 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1i3O35627 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nr1i3O35627 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nr1i3O35627 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Nr1i3O35627 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nr1i3O35627 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms