Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pcdhgb8A0A140LI48 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Gm15039-201ENSMUST00000118914 875 ntBASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pcdhgb8A0A140LI48 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 AC164883.3-201ENSMUST00000227396 1774 ntBASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pcdhgb8A0A140LI48 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Pcdhgb8A0A140LI48 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Pcdhgb8A0A140LI48 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Pcdhgb8A0A140LI48 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Pcdhgb8A0A140LI48 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Pcdhgb8A0A140LI48 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Gm9847-201ENSMUST00000052528 599 ntBASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Pcdhgb8A0A140LI48 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Pcdhgb8A0A140LI48 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.74■□□□□ 0.43
Pcdhgb8A0A140LI48 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Pcdhgb8A0A140LI48 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Pcdhgb8A0A140LI48 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Pcdhgb8A0A140LI48 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Pcdhgb8A0A140LI48 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Pcdhgb8A0A140LI48 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Pcdhgb8A0A140LI48 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.73■□□□□ 0.43
Pcdhgb8A0A140LI48 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhgb8A0A140LI48 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhgb8A0A140LI48 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Pcdhgb8A0A140LI48 Gm43182-201ENSMUST00000199476 2528 ntBASIC17.72■□□□□ 0.43
Pcdhgb8A0A140LI48 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
Pcdhgb8A0A140LI48 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Pcdhgb8A0A140LI48 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Pcdhgb8A0A140LI48 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms