Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Mcpt4-201ENSMUST00000043249 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm10053-201ENSMUST00000073080 949 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Ppef2-202ENSMUST00000201130 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Pla2g5-203ENSMUST00000102512 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Tmbim7-201ENSMUST00000014673 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Ifit1bl1-202ENSMUST00000168254 2215 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm28578-203ENSMUST00000189196 1470 ntTSL 5 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm10463-202ENSMUST00000195772 2889 ntBASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Htr3b-201ENSMUST00000008734 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Slc39a14-210ENSMUST00000152067 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Ptpro-201ENSMUST00000077115 5049 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Cyp2d9-201ENSMUST00000089129 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Phf20-ps-201ENSMUST00000185066 2886 ntBASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gm3404-201ENSMUST00000110596 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gm16252-201ENSMUST00000144420 857 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Tead1-211ENSMUST00000170352 1218 ntTSL 5 BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gm44460-201ENSMUST00000196179 129 ntBASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gm40153-201ENSMUST00000197904 637 ntTSL 3 BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gm8256-202ENSMUST00000227964 828 ntBASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Galp-201ENSMUST00000037553 650 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Hcrtr2-203ENSMUST00000184757 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gm30074-201ENSMUST00000193192 2541 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Orc4-201ENSMUST00000028098 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Anxa11os-201ENSMUST00000184083 2479 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
Usp40Q8BWR4 Gm13498-201ENSMUST00000119159 2166 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Zfp133-ps-201ENSMUST00000119058 1802 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Kif2a-206ENSMUST00000159772 2570 ntTSL 5 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Gm12221-201ENSMUST00000125096 1131 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Gm14004-201ENSMUST00000138875 590 ntTSL 2 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Tnnc1-202ENSMUST00000169169 721 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Gm20703-201ENSMUST00000175668 385 ntTSL 2 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Pkib-204ENSMUST00000175852 731 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Spin3-ps-201ENSMUST00000192825 770 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Gm44139-201ENSMUST00000204903 373 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Lysmd4-203ENSMUST00000207757 631 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Cox7a1-202ENSMUST00000208441 485 ntTSL 2 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 AC166061.1-201ENSMUST00000225163 1138 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 AC102523.2-201ENSMUST00000227813 983 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 AC161581.1-201ENSMUST00000228696 318 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Tmem89-201ENSMUST00000026744 538 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Ampd3-206ENSMUST00000170374 3489 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Gm37422-201ENSMUST00000193794 4718 ntBASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Xaf1-204ENSMUST00000146233 2597 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Bbs7-201ENSMUST00000040148 2599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Usp40Q8BWR4 Zfp74-204ENSMUST00000108212 2060 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Gm16499-201ENSMUST00000204648 2065 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Cckar-202ENSMUST00000200691 3230 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Lims1-201ENSMUST00000020077 1565 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Atg9a-205ENSMUST00000188347 4041 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Gm42879-201ENSMUST00000198656 2214 ntBASIC14.22□□□□□ -0.13
Usp40Q8BWR4 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Cd74-203ENSMUST00000167610 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Gm15476-201ENSMUST00000118247 1191 ntBASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Gm16234-201ENSMUST00000124976 815 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Gm15587-202ENSMUST00000156403 709 ntTSL 5 BASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Gm23521-201ENSMUST00000177845 110 ntBASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Gm3945-201ENSMUST00000196637 683 ntBASIC14.22□□□□□ -0.13
Usp40Q8BWR4 CAAA01125382.3-201ENSMUST00000215277 643 ntBASIC14.22□□□□□ -0.13
Usp40Q8BWR4 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 81.6 ms