Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm20629-201ENSMUST00000176157 513 ntTSL 3 BASIC15.84■□□□□ 0.13
Cux1P53564 Gm27953-201ENSMUST00000185171 143 ntBASIC15.84■□□□□ 0.13
Cux1P53564 Etv3l-201ENSMUST00000193196 325 ntBASIC15.84■□□□□ 0.13
Cux1P53564 Gm6342-201ENSMUST00000204344 766 ntBASIC15.84■□□□□ 0.13
Cux1P53564 AC161763.1-201ENSMUST00000227063 168 ntBASIC15.84■□□□□ 0.13
Cux1P53564 CT571271.1-201ENSMUST00000227071 670 ntBASIC15.84■□□□□ 0.13
Cux1P53564 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Bbs7-201ENSMUST00000040148 2599 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Htr3b-201ENSMUST00000008734 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Zfp948-201ENSMUST00000088787 2612 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Klk11-201ENSMUST00000080211 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
Cux1P53564 1700110I01Rik-202ENSMUST00000112812 1737 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Cux1P53564 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC15.83■□□□□ 0.12
Cux1P53564 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
Cux1P53564 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Cux1P53564 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cux1P53564 Gm37368-201ENSMUST00000193173 3212 ntBASIC15.83■□□□□ 0.12
Cux1P53564 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cux1P53564 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Cux1P53564 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cux1P53564 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cux1P53564 Gm13397-201ENSMUST00000119562 878 ntBASIC15.83■□□□□ 0.12
Cux1P53564 Gm13377-201ENSMUST00000137984 683 ntBASIC15.83■□□□□ 0.12
Cux1P53564 Gm20281-201ENSMUST00000188225 267 ntBASIC15.83■□□□□ 0.12
Cux1P53564 5031425E22Rik-203ENSMUST00000188328 828 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cux1P53564 Gm37819-201ENSMUST00000194626 1065 ntBASIC15.83■□□□□ 0.12
Cux1P53564 Ift172-206ENSMUST00000201809 405 ntTSL 5 BASIC15.83■□□□□ 0.12
Cux1P53564 Gm18129-201ENSMUST00000208834 1044 ntBASIC15.83■□□□□ 0.12
Cux1P53564 Gm18857-201ENSMUST00000210421 901 ntBASIC15.83■□□□□ 0.12
Cux1P53564 AC120406.1-201ENSMUST00000220362 482 ntBASIC15.83■□□□□ 0.12
Cux1P53564 Olfr649-201ENSMUST00000060440 939 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Cux1P53564 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cux1P53564 Rpgr-202ENSMUST00000072393 2380 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
Cux1P53564 Fam234a-202ENSMUST00000118487 2629 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cux1P53564 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 C2cd5-201ENSMUST00000087485 4265 ntTSL 5 BASIC15.82■□□□□ 0.12
Cux1P53564 Camk2g-202ENSMUST00000080440 3604 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cux1P53564 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Tcf4-203ENSMUST00000114977 3070 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC15.82■□□□□ 0.12
Cux1P53564 Phf20-ps-201ENSMUST00000185066 2886 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Rxfp2-202ENSMUST00000110496 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC15.82■□□□□ 0.12
Cux1P53564 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Mir705-201ENSMUST00000102058 82 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Rgs8-205ENSMUST00000111815 765 ntTSL 5 BASIC15.82■□□□□ 0.12
Cux1P53564 Gm14227-201ENSMUST00000119431 629 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Rpl7a-ps12-201ENSMUST00000120384 794 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Gm6881-201ENSMUST00000121811 833 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Gm16210-201ENSMUST00000122161 610 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Cd209b-203ENSMUST00000171635 1000 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Gm9771-201ENSMUST00000198267 1137 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Tas2r141-ps4-201ENSMUST00000205072 946 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Gm45521-201ENSMUST00000211339 676 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cux1P53564 Gm8768-201ENSMUST00000220020 826 ntBASIC15.82■□□□□ 0.12
Cux1P53564 1700063H04Rik-201ENSMUST00000043553 817 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Cenph-201ENSMUST00000075550 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Il18bp-203ENSMUST00000209844 1594 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 Ctsll3-201ENSMUST00000043754 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 AA474408-201ENSMUST00000098110 3339 ntBASIC15.82■□□□□ 0.12
Cux1P53564 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cux1P53564 6330415B21Rik-201ENSMUST00000204215 2200 ntBASIC15.81■□□□□ 0.12
Cux1P53564 March10-201ENSMUST00000049995 3074 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Cux1P53564 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 4933436P19Rik-201ENSMUST00000217736 1442 ntBASIC15.81■□□□□ 0.12
Cux1P53564 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Cux1P53564 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC15.81■□□□□ 0.12
Cux1P53564 Crisp4-203ENSMUST00000115344 960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Mrgpra2b-201ENSMUST00000119798 1265 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Rps9-205ENSMUST00000126562 896 ntTSL 2 BASIC15.81■□□□□ 0.12
Cux1P53564 Gnb2-214ENSMUST00000168746 802 ntTSL 5 BASIC15.81■□□□□ 0.12
Cux1P53564 H2-Pb-201ENSMUST00000172731 531 ntBASIC15.81■□□□□ 0.12
Cux1P53564 AC164978.2-201ENSMUST00000226645 857 ntBASIC15.81■□□□□ 0.12
Cux1P53564 Hprt-201ENSMUST00000026723 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Krtap9-1-201ENSMUST00000093936 1044 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Cux1P53564 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 2810455O05Rik-201ENSMUST00000138442 1691 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Rad52-212ENSMUST00000162461 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC15.81■□□□□ 0.12
Cux1P53564 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Mfsd2b-201ENSMUST00000045921 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Cux1P53564 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cux1P53564 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
Cux1P53564 AC125409.1-201ENSMUST00000223213 3370 ntBASIC15.81■□□□□ 0.12
Cux1P53564 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cux1P53564 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 87.6 ms