Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 AC134913.2-201ENSMUST00000225017 771 ntBASIC12.2□□□□□ -0.46
Traf1P39428 AC124581.2-201ENSMUST00000225459 282 ntBASIC12.2□□□□□ -0.46
Traf1P39428 AC160562.2-201ENSMUST00000216374 2201 ntTSL 2 BASIC12.2□□□□□ -0.46
Traf1P39428 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Traf1P39428 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC12.2□□□□□ -0.46
Traf1P39428 Gm37697-201ENSMUST00000195680 1844 ntBASIC12.2□□□□□ -0.46
Traf1P39428 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC12.2□□□□□ -0.46
Traf1P39428 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Traf1P39428 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Psd-201ENSMUST00000041391 3900 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Traf1P39428 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Traf1P39428 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Traf1P39428 Gm13120-201ENSMUST00000117343 1446 ntBASIC12.2□□□□□ -0.46
Traf1P39428 Gm6783-201ENSMUST00000120916 1437 ntBASIC12.2□□□□□ -0.46
Traf1P39428 Gm8873-201ENSMUST00000217847 1439 ntBASIC12.2□□□□□ -0.46
Traf1P39428 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Csnk1g1-214ENSMUST00000206594 2482 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Traf1P39428 Gm42432-201ENSMUST00000197902 1617 ntBASIC12.19□□□□□ -0.46
Traf1P39428 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Dyrk1a-203ENSMUST00000122284 2356 ntTSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Pcdhga1-201ENSMUST00000194190 4692 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Gm23255-201ENSMUST00000102244 110 ntBASIC12.19□□□□□ -0.46
Traf1P39428 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Gm8152-201ENSMUST00000120842 637 ntBASIC12.19□□□□□ -0.46
Traf1P39428 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC12.19□□□□□ -0.46
Traf1P39428 Cd79b-202ENSMUST00000167143 1195 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Ccr6-204ENSMUST00000167956 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Gm7627-201ENSMUST00000183205 999 ntBASIC12.19□□□□□ -0.46
Traf1P39428 Lockd-205ENSMUST00000185152 496 ntTSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Gm8643-201ENSMUST00000195228 625 ntBASIC12.19□□□□□ -0.46
Traf1P39428 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC12.19□□□□□ -0.46
Traf1P39428 Gm4032-203ENSMUST00000211600 531 ntTSL 3 BASIC12.19□□□□□ -0.46
Traf1P39428 Gm9644-201ENSMUST00000212828 1183 ntBASIC12.19□□□□□ -0.46
Traf1P39428 Ppid-201ENSMUST00000029382 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 5730422E09Rik-201ENSMUST00000180733 1740 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 1700022A22Rik-202ENSMUST00000187130 1458 ntTSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Atp11c-202ENSMUST00000101527 6044 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Atxn7l1-203ENSMUST00000110824 1675 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Gm8094-201ENSMUST00000165136 1408 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Traf1P39428 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Traf1P39428 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Olfr315-202ENSMUST00000203256 2458 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
Traf1P39428 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Traf1P39428 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Unc5cl-201ENSMUST00000074574 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Gm16209-201ENSMUST00000118457 627 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Mir1896-201ENSMUST00000122641 81 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gm10171-201ENSMUST00000126220 628 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gm26208-201ENSMUST00000158677 124 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gng2-203ENSMUST00000159073 960 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Traf1P39428 Mir6953-201ENSMUST00000184745 68 ntBASIC12.18□□□□□ -0.46
Traf1P39428 1700019D03Rik-207ENSMUST00000191441 638 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
Traf1P39428 Gm37597-201ENSMUST00000191853 382 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gm5340-201ENSMUST00000203733 880 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gm44155-201ENSMUST00000203923 412 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gm35611-201ENSMUST00000205323 799 ntTSL 3 BASIC12.18□□□□□ -0.46
Traf1P39428 Gpx4-ps2-201ENSMUST00000214811 555 ntBASIC12.18□□□□□ -0.46
Traf1P39428 AC107752.1-201ENSMUST00000219362 469 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Gm3926-201ENSMUST00000223378 1123 ntBASIC12.18□□□□□ -0.46
Traf1P39428 AC154431.1-201ENSMUST00000224910 880 ntBASIC12.18□□□□□ -0.46
Traf1P39428 AC154436.1-201ENSMUST00000227272 782 ntBASIC12.18□□□□□ -0.46
Traf1P39428 1700047G03Rik-205ENSMUST00000227822 1048 ntBASIC12.18□□□□□ -0.46
Traf1P39428 Fabp1-201ENSMUST00000067492 553 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Vps25-201ENSMUST00000007533 615 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Traf1P39428 Gm10233-201ENSMUST00000089275 628 ntBASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms