Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC10□□□□□ -0.81
Cdx2P43241 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC10□□□□□ -0.81
Cdx2P43241 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
Cdx2P43241 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Igkv3-9-201ENSMUST00000103398 359 ntAPPRIS P1 BASIC10□□□□□ -0.81
Cdx2P43241 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC10□□□□□ -0.81
Cdx2P43241 Gm9095-201ENSMUST00000117607 881 ntBASIC10□□□□□ -0.81
Cdx2P43241 Gm9097-201ENSMUST00000120514 880 ntBASIC10□□□□□ -0.81
Cdx2P43241 Gm12927-201ENSMUST00000150252 373 ntTSL 2 BASIC10□□□□□ -0.81
Cdx2P43241 Gm26021-201ENSMUST00000158664 131 ntBASIC10□□□□□ -0.81
Cdx2P43241 1700028K03Rik-202ENSMUST00000159902 742 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Cdx2P43241 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Gm23521-201ENSMUST00000177845 110 ntBASIC10□□□□□ -0.81
Cdx2P43241 2700099C18Rik-203ENSMUST00000182475 969 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Gm27241-201ENSMUST00000183517 622 ntTSL 3 BASIC10□□□□□ -0.81
Cdx2P43241 Gm27441-201ENSMUST00000185000 105 ntBASIC10□□□□□ -0.81
Cdx2P43241 Gm21083-201ENSMUST00000188807 1141 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Gm19058-201ENSMUST00000192135 598 ntBASIC10□□□□□ -0.81
Cdx2P43241 Gm37232-201ENSMUST00000194887 367 ntBASIC10□□□□□ -0.81
Cdx2P43241 Gm44460-201ENSMUST00000196179 129 ntBASIC10□□□□□ -0.81
Cdx2P43241 Gm21149-201ENSMUST00000197995 1212 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
Cdx2P43241 Gm44017-201ENSMUST00000203231 740 ntTSL 5 BASIC10□□□□□ -0.81
Cdx2P43241 Gm18391-201ENSMUST00000217189 658 ntBASIC10□□□□□ -0.81
Cdx2P43241 Gm25483-201ENSMUST00000083224 227 ntBASIC10□□□□□ -0.81
Cdx2P43241 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Ubap2l-203ENSMUST00000090908 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC10□□□□□ -0.81
Cdx2P43241 Ank3-204ENSMUST00000092432 5832 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Cdx2P43241 5930420M18Rik-201ENSMUST00000202893 2281 ntBASIC10□□□□□ -0.81
Cdx2P43241 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Spns3-201ENSMUST00000021154 1804 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Gm5124-202ENSMUST00000132683 2083 ntBASIC10□□□□□ -0.81
Cdx2P43241 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Acsl1-201ENSMUST00000034046 3897 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx2P43241 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Adh1-201ENSMUST00000004232 1492 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm24471-201ENSMUST00000104485 131 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC9.99□□□□□ -0.81
Cdx2P43241 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Mir1190-201ENSMUST00000116925 96 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Gm8216-201ENSMUST00000117232 601 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Polr1c-203ENSMUST00000124655 829 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm16193-201ENSMUST00000125903 778 ntTSL 3 BASIC9.99□□□□□ -0.81
Cdx2P43241 1700112J05Rik-201ENSMUST00000129353 793 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Piga-204ENSMUST00000133813 1086 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 Rrm2b-207ENSMUST00000146821 420 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 1700026D11Rik-205ENSMUST00000151417 789 ntTSL 3 BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm15587-202ENSMUST00000156403 709 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm25154-201ENSMUST00000157123 119 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Pttg1ip-208ENSMUST00000162943 721 ntAPPRIS ALT2 TSL 3 BASIC9.99□□□□□ -0.81
Cdx2P43241 Rps28-205ENSMUST00000173844 382 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm9117-201ENSMUST00000177735 1098 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm7672-201ENSMUST00000180915 872 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Gm26978-201ENSMUST00000182843 304 ntTSL 3 BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm3052-201ENSMUST00000186409 829 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Gm38004-201ENSMUST00000192972 357 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Gm6069-201ENSMUST00000196501 463 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Fkbp6-203ENSMUST00000201784 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm32772-203ENSMUST00000207022 675 ntTSL 3 BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm8268-201ENSMUST00000209683 458 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 CT009550.1-201ENSMUST00000225750 864 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Rpl22l1-201ENSMUST00000043867 552 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Olfr1349-201ENSMUST00000051982 1054 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
Cdx2P43241 n-R5s25-201ENSMUST00000082923 119 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Esp6-201ENSMUST00000097324 658 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Gm38227-201ENSMUST00000193036 1602 ntBASIC9.99□□□□□ -0.81
Cdx2P43241 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx2P43241 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
Cdx2P43241 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx2P43241 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC9.98□□□□□ -0.81
Cdx2P43241 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx2P43241 Btn2a2-204ENSMUST00000223877 2109 ntAPPRIS ALT2 BASIC9.98□□□□□ -0.81
Cdx2P43241 Cdc42-202ENSMUST00000051477 2108 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx2P43241 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx2P43241 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx2P43241 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx2P43241 Gm10686-201ENSMUST00000215389 3247 ntBASIC9.98□□□□□ -0.81
Cdx2P43241 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms