Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Gm15604-201ENSMUST00000118350 1456 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Lyrm1-204ENSMUST00000106518 875 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Klrc2-202ENSMUST00000112057 1149 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Rplp1-ps1-201ENSMUST00000119410 345 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Gm13281-201ENSMUST00000120871 567 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 4930538E20Rik-201ENSMUST00000131383 546 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Gm26532-201ENSMUST00000180630 690 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 6030460B20Rik-201ENSMUST00000191764 1058 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Gm43275-201ENSMUST00000202053 1020 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Gm44908-201ENSMUST00000208610 266 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Gm45090-201ENSMUST00000208775 1148 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 AC124356.1-201ENSMUST00000221469 698 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 AC161877.1-201ENSMUST00000227736 699 ntBASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Tstd2-202ENSMUST00000107772 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Acvr1-203ENSMUST00000112599 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Rufy4-202ENSMUST00000127134 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp40Q8BWR4 H2-T3-204ENSMUST00000102675 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Usp40Q8BWR4 Acsl1-201ENSMUST00000034046 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Usp40Q8BWR4 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm10699-201ENSMUST00000098916 2130 ntBASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Igsf11-202ENSMUST00000114706 1578 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 AC108416.1-201ENSMUST00000228755 1558 ntBASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Car13-201ENSMUST00000029071 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm12420-201ENSMUST00000119869 1048 ntBASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm15650-201ENSMUST00000135451 770 ntTSL 3 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm16574-201ENSMUST00000159301 745 ntBASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm26716-201ENSMUST00000181227 415 ntTSL 5 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm6216-201ENSMUST00000182390 687 ntBASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm37016-201ENSMUST00000195507 660 ntTSL 5 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm45846-201ENSMUST00000211170 446 ntTSL 2 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 AC174647.1-201ENSMUST00000227419 1271 ntBASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Iah1-201ENSMUST00000076813 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Ttc23-203ENSMUST00000107471 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Gm5174-201ENSMUST00000171131 1423 ntBASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Rint1-203ENSMUST00000115113 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp40Q8BWR4 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm26953-209ENSMUST00000213051 2087 ntTSL 5 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm7190-201ENSMUST00000118669 1452 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gpatch1-201ENSMUST00000079693 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm42731-201ENSMUST00000201839 1641 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Snrnp27-201ENSMUST00000001186 885 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm14034-201ENSMUST00000120147 551 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm25394-201ENSMUST00000157338 133 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm5873-201ENSMUST00000177157 1066 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm20474-201ENSMUST00000180089 596 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm27200-201ENSMUST00000184626 657 ntTSL 3 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Nme6-206ENSMUST00000197627 905 ntTSL 3 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm18894-201ENSMUST00000198794 694 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm17936-201ENSMUST00000199413 988 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm36028-202ENSMUST00000205931 1161 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Acsm5-204ENSMUST00000207387 1130 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm32098-201ENSMUST00000211305 479 ntTSL 5 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 CT025689.5-201ENSMUST00000224316 986 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 AC121357.1-201ENSMUST00000227365 608 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm10344-201ENSMUST00000193498 1419 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Ifitm7-202ENSMUST00000178021 1823 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Gm38376-201ENSMUST00000195493 2253 ntBASIC14.38□□□□□ -0.11
Usp40Q8BWR4 Igsf5-201ENSMUST00000000163 1851 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms