Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Scgb3a1-202ENSMUST00000076006 598 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Proca1-202ENSMUST00000078099 1254 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Nrap-205ENSMUST00000167239 4752 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Cdx2P43241 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Theg-201ENSMUST00000020566 1444 ntAPPRIS P4 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Cdx2P43241 Tulp2-203ENSMUST00000107758 1597 ntTSL 5 BASIC10.04□□□□□ -0.8
Cdx2P43241 Lims1-201ENSMUST00000020077 1565 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Hat1-201ENSMUST00000028408 1576 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Vbp1-201ENSMUST00000033540 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Cd14-201ENSMUST00000061829 1572 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Pde5a-201ENSMUST00000066728 6939 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Eif2ak4-203ENSMUST00000110869 1715 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Cdx2P43241 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Cdx2P43241 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Cdx2P43241 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC10.04□□□□□ -0.8
Cdx2P43241 Olfr543-202ENSMUST00000219647 1456 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Cdx2P43241 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC10.04□□□□□ -0.8
Cdx2P43241 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm21939-201ENSMUST00000221137 2773 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm37697-201ENSMUST00000195680 1844 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Champ1-201ENSMUST00000051870 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Wfdc2-203ENSMUST00000109345 558 ntAPPRIS ALT2 TSL 3 BASIC10.03□□□□□ -0.8
Cdx2P43241 Adig-202ENSMUST00000109484 488 ntTSL 2 BASIC10.03□□□□□ -0.8
Cdx2P43241 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm15032-201ENSMUST00000118547 411 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Gm15419-201ENSMUST00000148654 743 ntTSL 3 BASIC10.03□□□□□ -0.8
Cdx2P43241 Itgb1bp1-202ENSMUST00000172834 801 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm7251-201ENSMUST00000182661 1009 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Pou1f1-205ENSMUST00000184525 1020 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 E330020D12Rik-203ENSMUST00000188717 766 ntTSL 2 BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm2316-201ENSMUST00000190613 921 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Gm45846-201ENSMUST00000211170 446 ntTSL 2 BASIC10.03□□□□□ -0.8
Cdx2P43241 AC166902.2-202ENSMUST00000213191 1038 ntTSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm8960-201ENSMUST00000219787 788 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Gm18749-201ENSMUST00000222410 692 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 AC102327.1-201ENSMUST00000226389 742 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 AC149294.3-201ENSMUST00000226888 732 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 AC123061.1-201ENSMUST00000228021 999 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Phf5a-201ENSMUST00000023117 864 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Sun5-201ENSMUST00000028982 1157 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Cxcl3-201ENSMUST00000031326 1016 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Tbata-202ENSMUST00000079235 696 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Tpd52-202ENSMUST00000091354 2193 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm26658-201ENSMUST00000181067 2500 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Camk2a-203ENSMUST00000102888 4970 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 AC116596.1-201ENSMUST00000228112 1762 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm7823-201ENSMUST00000120761 1623 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC10.03□□□□□ -0.8
Cdx2P43241 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Gm14538-201ENSMUST00000122019 1327 ntBASIC10.03□□□□□ -0.8
Cdx2P43241 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Cdx2P43241 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC10.02□□□□□ -0.8
Cdx2P43241 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC10.02□□□□□ -0.8
Cdx2P43241 Gm32914-201ENSMUST00000203815 2228 ntBASIC10.02□□□□□ -0.81
Cdx2P43241 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Mak-203ENSMUST00000165087 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Gm42851-201ENSMUST00000201325 1411 ntBASIC10.02□□□□□ -0.81
Cdx2P43241 H2-M10.4-201ENSMUST00000057502 1410 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
Cdx2P43241 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Gm22582-201ENSMUST00000102283 94 ntBASIC10.02□□□□□ -0.81
Cdx2P43241 Gm12047-201ENSMUST00000117561 944 ntBASIC10.02□□□□□ -0.81
Cdx2P43241 Gm12489-201ENSMUST00000119364 148 ntBASIC10.02□□□□□ -0.81
Cdx2P43241 Defa-ps17-201ENSMUST00000121849 171 ntBASIC10.02□□□□□ -0.81
Cdx2P43241 Gm12946-201ENSMUST00000122969 519 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Gm13580-201ENSMUST00000131457 566 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Cdx2P43241 Gm15650-201ENSMUST00000135451 770 ntTSL 3 BASIC10.02□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 252.5 ms