Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Trim69-201ENSMUST00000036089 1758 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Nrbp2-201ENSMUST00000019516 2495 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Luc7l-202ENSMUST00000114976 4934 ntAPPRIS P4 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm43014-201ENSMUST00000198568 2443 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm5739-201ENSMUST00000208601 1703 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Ssrp1-209ENSMUST00000168266 2721 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Trp63-207ENSMUST00000115308 2380 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Nfyc-204ENSMUST00000120779 2006 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Umodl1-202ENSMUST00000066981 4662 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Zfp114-201ENSMUST00000086010 3332 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Rab27a-201ENSMUST00000034722 2979 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Lipa-201ENSMUST00000049572 2969 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Lamp2-202ENSMUST00000061755 3604 ntAPPRIS P5 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Rimbp2-201ENSMUST00000111346 4264 ntAPPRIS P3 TSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Zmat2-201ENSMUST00000001419 2257 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Efcab12-201ENSMUST00000032468 2551 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm11244-201ENSMUST00000121243 237 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm11915-201ENSMUST00000153669 358 ntTSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Mipep-ps-201ENSMUST00000177439 291 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm5865-201ENSMUST00000198713 637 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 CT573047.1-201ENSMUST00000223652 851 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 AC166344.1-201ENSMUST00000223745 674 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm9785-201ENSMUST00000062642 1006 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm45501-201ENSMUST00000211468 2526 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Ubap2-201ENSMUST00000030143 4368 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm42571-201ENSMUST00000201197 2464 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm498-202ENSMUST00000152910 1507 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Unc80-201ENSMUST00000061620 13613 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Fancb-202ENSMUST00000101082 2980 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
Hmgb3O54879 Gm42971-201ENSMUST00000199228 2079 ntBASIC8.63□□□□□ -1.03
Hmgb3O54879 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Ptpn7-202ENSMUST00000167080 2945 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Lrrc28-202ENSMUST00000053950 2923 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Nipal3-202ENSMUST00000105856 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hmgb3O54879 Kcnma1-207ENSMUST00000172099 3354 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Pcdh1-201ENSMUST00000057185 3902 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Ctnnd1-224ENSMUST00000111698 5850 ntTSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Anxa11os-201ENSMUST00000184083 2479 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Ptprb-201ENSMUST00000092167 11911 ntAPPRIS P2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 CT025639.2-202ENSMUST00000225298 1630 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Plod1-201ENSMUST00000019199 3243 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Champ1-201ENSMUST00000051870 4013 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Oprl1-205ENSMUST00000108768 2914 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Mut-201ENSMUST00000169611 3675 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Myof-202ENSMUST00000172095 7094 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Sftpa1-202ENSMUST00000170719 2854 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Nufip2-204ENSMUST00000181023 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Stard13-202ENSMUST00000110483 5662 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Dhcr7-202ENSMUST00000124340 2556 ntAPPRIS P2 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Rbm10-204ENSMUST00000115374 3564 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm9089-201ENSMUST00000122027 526 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm6397-201ENSMUST00000161973 1069 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm25890-201ENSMUST00000177643 165 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Rnu1b2-201ENSMUST00000178073 165 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Rnu1b1-201ENSMUST00000178250 165 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm22614-201ENSMUST00000178300 165 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm27953-201ENSMUST00000185171 143 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC8.62□□□□□ -1.03
Hmgb3O54879 Ighv1-62-201ENSMUST00000193406 350 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Hmgb3O54879 Gm18042-201ENSMUST00000219887 790 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 CT009546.1-201ENSMUST00000222573 1120 ntBASIC8.62□□□□□ -1.03
Hmgb3O54879 Tctex1d1-201ENSMUST00000030248 977 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
Retrieved 100 of 76,532 protein–RNA pairs in 94.3 ms