Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm22475-201ENSMUST00000175169 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm22903-201ENSMUST00000175193 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25070-201ENSMUST00000175237 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm24159-201ENSMUST00000175264 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25299-201ENSMUST00000175283 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm23798-201ENSMUST00000175560 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm23802-201ENSMUST00000175565 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25708-201ENSMUST00000177687 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm24370-201ENSMUST00000178007 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm23049-201ENSMUST00000178068 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm28019-201ENSMUST00000178138 101 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25571-201ENSMUST00000178322 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25355-201ENSMUST00000178456 101 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm24975-201ENSMUST00000178492 101 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm23189-201ENSMUST00000178954 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25100-201ENSMUST00000179750 101 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm23064-201ENSMUST00000179866 101 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm6855-201ENSMUST00000206307 790 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Arsb-201ENSMUST00000091403 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Mthfsd-201ENSMUST00000047282 8312 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Stk4-201ENSMUST00000018353 5232 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Smok4a-201ENSMUST00000074512 1455 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Cx3cl1-201ENSMUST00000034230 3315 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm44617-202ENSMUST00000209122 2763 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Sh3bgrl-201ENSMUST00000033598 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Armcx3-203ENSMUST00000086884 3488 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Atxn1l-201ENSMUST00000093162 7526 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Nap1l2-201ENSMUST00000121720 2465 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Bcat1-203ENSMUST00000111742 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Card14-202ENSMUST00000106250 4206 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Ccdc148-204ENSMUST00000226455 4612 ntAPPRIS ALT2 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Bco1-201ENSMUST00000034308 2338 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Olfr71-203ENSMUST00000217544 2707 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm40557-201ENSMUST00000220782 2736 ntTSL 5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Mdm4-206ENSMUST00000186617 4694 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Tbc1d31-201ENSMUST00000022992 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm23612-201ENSMUST00000103823 110 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm20414-201ENSMUST00000172918 646 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm23576-201ENSMUST00000179918 110 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm37852-201ENSMUST00000193027 350 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm30946-201ENSMUST00000198288 724 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm9487-201ENSMUST00000216600 472 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 D030055H07Rik-202ENSMUST00000150953 4325 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Zfp873-203ENSMUST00000209622 2284 ntTSL 2 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Slc7a3-202ENSMUST00000101362 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Myo18a-208ENSMUST00000108375 7513 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm7357-201ENSMUST00000195361 2991 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Dglucy-201ENSMUST00000069782 3295 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Cdkl2-201ENSMUST00000069937 3976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Arfgap3-201ENSMUST00000067215 2619 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Elf5-206ENSMUST00000164172 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm44798-201ENSMUST00000208123 2410 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Sorbs1-201ENSMUST00000099466 2223 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Bicral-201ENSMUST00000040624 6579 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Serpinb6b-203ENSMUST00000164541 1719 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 AC122367.1-201ENSMUST00000221978 1709 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Gm5171-201ENSMUST00000214944 1415 ntBASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Smc1aQ9CU62 Suclg2-204ENSMUST00000204224 3367 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Smc1aQ9CU62 Peg10-201ENSMUST00000166678 6662 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Smc1aQ9CU62 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Smc1aQ9CU62 Itgad-204ENSMUST00000177111 3845 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Smc1aQ9CU62 Gm42047-202ENSMUST00000212899 4988 ntTSL 2 BASIC11.85□□□□□ -0.51
Smc1aQ9CU62 Exo1-201ENSMUST00000039725 7796 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 84.4 ms