Protein–RNA interactions for Protein: Q6P9Z1

Smarcd3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd3Q6P9Z1 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Smarcd3Q6P9Z1 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smarcd3Q6P9Z1 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smarcd3Q6P9Z1 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Smarcd3Q6P9Z1 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.22■□□□□ 0.51
Smarcd3Q6P9Z1 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Smarcd3Q6P9Z1 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smarcd3Q6P9Z1 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smarcd3Q6P9Z1 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Smarcd3Q6P9Z1 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.21■□□□□ 0.51
Smarcd3Q6P9Z1 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Smarcd3Q6P9Z1 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Smarcd3Q6P9Z1 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smarcd3Q6P9Z1 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smarcd3Q6P9Z1 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smarcd3Q6P9Z1 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Smarcd3Q6P9Z1 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Smarcd3Q6P9Z1 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smarcd3Q6P9Z1 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Smarcd3Q6P9Z1 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.17■□□□□ 0.5
Smarcd3Q6P9Z1 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Smarcd3Q6P9Z1 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.17■□□□□ 0.5
Smarcd3Q6P9Z1 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC18.17■□□□□ 0.5
Smarcd3Q6P9Z1 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Smarcd3Q6P9Z1 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smarcd3Q6P9Z1 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smarcd3Q6P9Z1 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.16■□□□□ 0.5
Smarcd3Q6P9Z1 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smarcd3Q6P9Z1 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smarcd3Q6P9Z1 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smarcd3Q6P9Z1 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Gm7143-201ENSMUST00000222811 859 ntBASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smarcd3Q6P9Z1 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Smarcd3Q6P9Z1 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Smarcd3Q6P9Z1 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Smarcd3Q6P9Z1 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.14■□□□□ 0.49
Smarcd3Q6P9Z1 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smarcd3Q6P9Z1 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smarcd3Q6P9Z1 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Smarcd3Q6P9Z1 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smarcd3Q6P9Z1 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Gm40881-201ENSMUST00000223397 166 ntBASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smarcd3Q6P9Z1 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms