Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.75■□□□□ 0.75
Col27a1Q5QNQ9 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col27a1Q5QNQ9 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col27a1Q5QNQ9 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col27a1Q5QNQ9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col27a1Q5QNQ9 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col27a1Q5QNQ9 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col27a1Q5QNQ9 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col27a1Q5QNQ9 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col27a1Q5QNQ9 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col27a1Q5QNQ9 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col27a1Q5QNQ9 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col27a1Q5QNQ9 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 Mir6236-201ENSMUST00000184437 123 ntBASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col27a1Q5QNQ9 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col27a1Q5QNQ9 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col27a1Q5QNQ9 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col27a1Q5QNQ9 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Col27a1Q5QNQ9 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.71■□□□□ 0.75
Col27a1Q5QNQ9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col27a1Q5QNQ9 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col27a1Q5QNQ9 Gm13836-201ENSMUST00000121159 501 ntBASIC19.7■□□□□ 0.74
Col27a1Q5QNQ9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Col27a1Q5QNQ9 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col27a1Q5QNQ9 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.7■□□□□ 0.74
Col27a1Q5QNQ9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Col27a1Q5QNQ9 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Col27a1Q5QNQ9 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Gm6365-201ENSMUST00000054711 744 ntBASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col27a1Q5QNQ9 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Gm6420-201ENSMUST00000193885 723 ntBASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col27a1Q5QNQ9 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col27a1Q5QNQ9 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col27a1Q5QNQ9 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col27a1Q5QNQ9 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col27a1Q5QNQ9 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col27a1Q5QNQ9 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Col27a1Q5QNQ9 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.64■□□□□ 0.73
Col27a1Q5QNQ9 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col27a1Q5QNQ9 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col27a1Q5QNQ9 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col27a1Q5QNQ9 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col27a1Q5QNQ9 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col27a1Q5QNQ9 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms