Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm22325-201ENSMUST00000158904 308 ntBASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC25.66■■□□□ 1.7
Ddb1Q3U1J4 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC25.66■■□□□ 1.7
Ddb1Q3U1J4 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ddb1Q3U1J4 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ddb1Q3U1J4 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ddb1Q3U1J4 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ddb1Q3U1J4 Il17rd-202ENSMUST00000223942 2186 ntBASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Mir7071-201ENSMUST00000184847 69 ntBASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Gm5913-201ENSMUST00000119397 1399 ntBASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Ddb1Q3U1J4 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 Gm43859-201ENSMUST00000200075 1412 ntBASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 Gm5408-201ENSMUST00000197998 747 ntBASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC25.64■■□□□ 1.7
Ddb1Q3U1J4 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Ddb1Q3U1J4 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 Gm13168-201ENSMUST00000121771 632 ntBASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
Ddb1Q3U1J4 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Ddb1Q3U1J4 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Ddb1Q3U1J4 Gm43403-201ENSMUST00000198011 1786 ntBASIC25.62■■□□□ 1.69
Ddb1Q3U1J4 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC25.62■■□□□ 1.69
Ddb1Q3U1J4 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
Ddb1Q3U1J4 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC25.62■■□□□ 1.69
Ddb1Q3U1J4 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Ddb1Q3U1J4 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
Ddb1Q3U1J4 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Ddb1Q3U1J4 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC25.61■■□□□ 1.69
Ddb1Q3U1J4 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Ddb1Q3U1J4 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC25.61■■□□□ 1.69
Ddb1Q3U1J4 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Ddb1Q3U1J4 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Gm7290-201ENSMUST00000104990 617 ntBASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Gm12918-201ENSMUST00000120234 636 ntBASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Gm15710-201ENSMUST00000121821 636 ntBASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Gm5075-201ENSMUST00000196916 622 ntBASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC25.6■■□□□ 1.69
Ddb1Q3U1J4 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ddb1Q3U1J4 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Ddb1Q3U1J4 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ddb1Q3U1J4 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Ddb1Q3U1J4 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
Ddb1Q3U1J4 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ddb1Q3U1J4 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Ddb1Q3U1J4 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Ddb1Q3U1J4 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC25.58■■□□□ 1.69
Ddb1Q3U1J4 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Ddb1Q3U1J4 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Ddb1Q3U1J4 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Ddb1Q3U1J4 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC25.58■■□□□ 1.68
Ddb1Q3U1J4 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Gm6365-201ENSMUST00000054711 744 ntBASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Ddb1Q3U1J4 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Gm20049-201ENSMUST00000219950 730 ntBASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Ddb1Q3U1J4 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ddb1Q3U1J4 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms