Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm32111-201ENSMUST00000207689 846 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm7525-201ENSMUST00000219425 454 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm43597-202ENSMUST00000201992 4620 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Specc1l-201ENSMUST00000040105 5928 ntTSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Edaradd-201ENSMUST00000179308 6668 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm9915-201ENSMUST00000066196 1383 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Ndufb2-205ENSMUST00000135671 4371 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Tns1-217ENSMUST00000191104 9904 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm15943-201ENSMUST00000147638 3821 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Plekha7-201ENSMUST00000084664 4312 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm5434-202ENSMUST00000222384 1451 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm5434-201ENSMUST00000071825 1451 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Myo5a-201ENSMUST00000123128 11702 ntTSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 1700047M11Rik-202ENSMUST00000189594 2607 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Cacna1f-201ENSMUST00000115725 6028 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Armc2-201ENSMUST00000095729 4855 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm44106-201ENSMUST00000203153 1599 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm42971-201ENSMUST00000199228 2079 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Pear1-201ENSMUST00000029714 4260 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm12389-201ENSMUST00000117696 418 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm13284-201ENSMUST00000121020 547 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm14165-201ENSMUST00000121456 952 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm34379-201ENSMUST00000195036 290 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm18035-201ENSMUST00000211962 589 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 AC160929.1-201ENSMUST00000221247 415 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Capsl-202ENSMUST00000226688 739 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 AC122035.1-201ENSMUST00000227576 1016 ntBASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Doxl2-203ENSMUST00000184917 2468 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Setbp1-201ENSMUST00000025430 9953 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Phf8-203ENSMUST00000112662 3732 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Vamp5-203ENSMUST00000206154 2619 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Smc1aQ9CU62 Capn15-204ENSMUST00000212149 4555 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm21039-201ENSMUST00000223359 2012 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 St5-203ENSMUST00000084738 3161 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm43375-201ENSMUST00000196705 2480 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Exoc4-202ENSMUST00000090381 2598 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Pcdh11x-202ENSMUST00000113358 8607 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Zfp658-201ENSMUST00000005597 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Slc6a9-202ENSMUST00000063857 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Slc45a3-202ENSMUST00000177943 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm29125-201ENSMUST00000187121 3220 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Pcdhb10-201ENSMUST00000051126 2851 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Arhgap17-202ENSMUST00000106442 3336 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Catsper1-201ENSMUST00000043380 2061 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Ptbp3-201ENSMUST00000030076 6855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Nfkbiz-204ENSMUST00000114458 3627 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 6430573F11Rik-203ENSMUST00000147525 5820 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm22594-201ENSMUST00000104251 130 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25148-201ENSMUST00000104611 123 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm14740-201ENSMUST00000118538 1150 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm4982-201ENSMUST00000160440 1098 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25677-201ENSMUST00000174983 72 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm23400-201ENSMUST00000174994 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm26463-201ENSMUST00000175065 101 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm24332-201ENSMUST00000175102 102 ntBASIC11.87□□□□□ -0.51
Smc1aQ9CU62 Gm25959-201ENSMUST00000175112 102 ntBASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms