Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Cux1P53564 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 4933422A05Rik-201ENSMUST00000213706 1356 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Fmo3-201ENSMUST00000028010 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 3110001I22Rik-201ENSMUST00000035426 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Gm37849-201ENSMUST00000194722 1881 ntBASIC16.04■□□□□ 0.16
Cux1P53564 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Cux1P53564 Gm10465-201ENSMUST00000223133 3334 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Cux1P53564 Gm23908-201ENSMUST00000104599 132 ntBASIC16.04■□□□□ 0.16
Cux1P53564 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC16.04■□□□□ 0.16
Cux1P53564 Gm8754-201ENSMUST00000118391 520 ntBASIC16.04■□□□□ 0.16
Cux1P53564 Gm14654-201ENSMUST00000118620 447 ntBASIC16.04■□□□□ 0.16
Cux1P53564 Gm16234-201ENSMUST00000124976 815 ntTSL 5 BASIC16.04■□□□□ 0.16
Cux1P53564 Chn2-209ENSMUST00000146114 1227 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Gm8203-201ENSMUST00000173192 387 ntBASIC16.04■□□□□ 0.16
Cux1P53564 2810049E08Rik-201ENSMUST00000185600 1102 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 CR974487.1-201ENSMUST00000220984 413 ntBASIC16.04■□□□□ 0.16
Cux1P53564 2210039B01Rik-201ENSMUST00000222490 1044 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Gm10689-201ENSMUST00000098864 432 ntBASIC16.04■□□□□ 0.16
Cux1P53564 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cux1P53564 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Rsrc2-208ENSMUST00000182309 1595 ntTSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Blk-201ENSMUST00000014597 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Gpr160-201ENSMUST00000046748 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Anks1b-203ENSMUST00000099368 2799 ntTSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Eif2s2-201ENSMUST00000099173 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Wdr95-207ENSMUST00000202902 2574 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Cux1P53564 Ighv2-2-201ENSMUST00000103443 352 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Cux1P53564 Vegfa-204ENSMUST00000113520 654 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Gm16013-201ENSMUST00000152249 353 ntTSL 3 BASIC16.03■□□□□ 0.16
Cux1P53564 Gm8907-201ENSMUST00000182240 1003 ntBASIC16.03■□□□□ 0.16
Cux1P53564 Gm42875-201ENSMUST00000197674 1015 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Gm30301-201ENSMUST00000199474 652 ntTSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Gm34105-201ENSMUST00000214812 571 ntTSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Gm19121-201ENSMUST00000215720 1022 ntBASIC16.03■□□□□ 0.16
Cux1P53564 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cux1P53564 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cux1P53564 Tmprss7-201ENSMUST00000114562 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Cux1P53564 Zfp352-202ENSMUST00000107129 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Oprk1-201ENSMUST00000027038 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Cux1P53564 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Tmem29-201ENSMUST00000059256 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Cux1P53564 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cux1P53564 Mettl8-204ENSMUST00000112186 2347 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
Cux1P53564 Gm5400-201ENSMUST00000118494 943 ntBASIC16.02■□□□□ 0.15
Cux1P53564 Gstm1-202ENSMUST00000126593 828 ntTSL 3 BASIC16.02■□□□□ 0.15
Cux1P53564 Gm29617-201ENSMUST00000185730 610 ntBASIC16.02■□□□□ 0.15
Cux1P53564 A430073D23Rik-201ENSMUST00000196262 665 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Cux1P53564 Gm44131-201ENSMUST00000203036 394 ntBASIC16.02■□□□□ 0.15
Cux1P53564 AC124484.1-201ENSMUST00000223212 652 ntBASIC16.02■□□□□ 0.15
Cux1P53564 Gm22982-201ENSMUST00000082613 319 ntBASIC16.02■□□□□ 0.15
Cux1P53564 BC051665-201ENSMUST00000026078 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cux1P53564 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cux1P53564 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cux1P53564 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Cux1P53564 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cux1P53564 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Cux1P53564 Gm5092-201ENSMUST00000188185 1675 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 Ube2q1-202ENSMUST00000196726 1650 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 Rdh7-201ENSMUST00000047199 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC16.01■□□□□ 0.15
Cux1P53564 Rpl7a-ps13-201ENSMUST00000121692 563 ntBASIC16.01■□□□□ 0.15
Cux1P53564 6330418K02Rik-202ENSMUST00000125662 1267 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 Gm15929-201ENSMUST00000138926 1161 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 Gm16350-201ENSMUST00000162958 446 ntTSL 2 BASIC16.01■□□□□ 0.15
Cux1P53564 Baat-202ENSMUST00000166036 1263 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Cux1P53564 Igkv4-54-201ENSMUST00000177697 288 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Cux1P53564 1700063D05Rik-203ENSMUST00000191461 666 ntTSL 2 BASIC16.01■□□□□ 0.15
Cux1P53564 Mpzl1-203ENSMUST00000191818 853 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 4933436E23Rik-201ENSMUST00000192824 1111 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cux1P53564 BC002189-201ENSMUST00000195674 598 ntBASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms