Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Pear1-202ENSMUST00000079083 4297 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gabrb3-206ENSMUST00000196198 4348 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Kcne4-201ENSMUST00000057262 2657 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Phf21a-205ENSMUST00000111291 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm37697-201ENSMUST00000195680 1844 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Helb-201ENSMUST00000020449 4554 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Atcay-201ENSMUST00000047408 3736 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 4930578C19Rik-201ENSMUST00000044188 1896 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Hecw2-203ENSMUST00000120904 11263 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Stpg2-201ENSMUST00000062306 2818 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm33366-201ENSMUST00000195583 3827 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Baat-201ENSMUST00000043056 1941 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Agbl5-201ENSMUST00000069705 2922 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Mkrn1-204ENSMUST00000114823 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Zfp780b-201ENSMUST00000081618 3004 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Eef2-201ENSMUST00000047864 3089 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Mmgt1-201ENSMUST00000059899 4234 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm28624-201ENSMUST00000186430 2131 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Nectin4-203ENSMUST00000111286 3201 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 AC122293.1-201ENSMUST00000218333 2231 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Phlpp2-203ENSMUST00000179721 7846 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Rfx2-201ENSMUST00000002444 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Tmem255a-201ENSMUST00000066498 3380 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Treml2-201ENSMUST00000170941 4509 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Ywhag-201ENSMUST00000055808 3520 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm13392-201ENSMUST00000117708 150 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm8731-201ENSMUST00000118088 412 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm15566-201ENSMUST00000121130 590 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm13263-201ENSMUST00000121271 838 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm6039-201ENSMUST00000121667 1250 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC8.68□□□□□ -1.02
Hmgb3O54879 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm12407-201ENSMUST00000180219 324 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm7003-201ENSMUST00000195089 312 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm9826-201ENSMUST00000029124 1299 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Zfp870-202ENSMUST00000228075 5222 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Acot12-201ENSMUST00000022120 3058 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm4900-201ENSMUST00000222046 1628 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Cx3cl1-201ENSMUST00000034230 3315 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Henmt1-203ENSMUST00000106586 1838 ntAPPRIS P2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 9530026P05Rik-201ENSMUST00000181121 2142 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Med12-204ENSMUST00000117706 6940 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.02
Hmgb3O54879 Osbpl1a-204ENSMUST00000119043 2522 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hmgb3O54879 Gm9220-201ENSMUST00000190721 2544 ntBASIC8.68□□□□□ -1.02
Hmgb3O54879 Zkscan2-201ENSMUST00000042470 7831 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Pde1c-204ENSMUST00000164752 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Ep400-204ENSMUST00000112436 10685 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Cyfip2-201ENSMUST00000093165 6604 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 AU040320-203ENSMUST00000102608 4073 ntAPPRIS P4 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Timd2-202ENSMUST00000109225 2236 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm8199-201ENSMUST00000121323 823 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm12715-201ENSMUST00000121430 1128 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 4921508D12Rik-201ENSMUST00000124095 1075 ntTSL 2 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC8.67□□□□□ -1.02
Hmgb3O54879 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Mkl1-203ENSMUST00000131235 4222 ntTSL 5 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm13660-201ENSMUST00000142828 722 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Adgrb3-207ENSMUST00000151309 5448 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm24992-201ENSMUST00000157412 130 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Plch1-208ENSMUST00000160638 6271 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Krt78-201ENSMUST00000164932 3434 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 4930471C04Rik-201ENSMUST00000166038 865 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Baiap3-201ENSMUST00000169109 3630 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm20482-202ENSMUST00000174729 825 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Cux1-211ENSMUST00000176745 2831 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm21778-201ENSMUST00000178779 471 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Chordc1-201ENSMUST00000001825 5789 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm19412-201ENSMUST00000185388 436 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm29499-201ENSMUST00000189151 486 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm29067-201ENSMUST00000190821 470 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm28329-201ENSMUST00000191208 689 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm29171-201ENSMUST00000191397 486 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm7118-201ENSMUST00000200167 1003 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Mthfd1-201ENSMUST00000021443 3241 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC8.67□□□□□ -1.02
Hmgb3O54879 AC122024.3-201ENSMUST00000217719 294 ntBASIC8.67□□□□□ -1.02
Hmgb3O54879 Gfra2-203ENSMUST00000227697 1323 ntBASIC8.67□□□□□ -1.02
Retrieved 100 of 76,532 protein–RNA pairs in 115 ms