Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Mir6958-201ENSMUST00000184207 73 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28298-201ENSMUST00000185287 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28127-201ENSMUST00000185293 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28176-201ENSMUST00000185322 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29532-201ENSMUST00000185593 622 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29315-201ENSMUST00000185844 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29581-201ENSMUST00000186083 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28296-202ENSMUST00000186151 622 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29210-201ENSMUST00000186332 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29498-201ENSMUST00000186449 537 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28761-201ENSMUST00000186540 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28170-201ENSMUST00000186892 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28326-201ENSMUST00000187043 622 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28073-201ENSMUST00000187174 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28725-201ENSMUST00000187372 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28301-201ENSMUST00000187582 537 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28464-201ENSMUST00000187726 622 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29655-201ENSMUST00000187728 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28280-201ENSMUST00000188196 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28295-201ENSMUST00000188322 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28091-201ENSMUST00000188421 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29215-202ENSMUST00000188659 621 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28697-202ENSMUST00000188821 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28521-201ENSMUST00000188948 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28850-201ENSMUST00000189058 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28300-202ENSMUST00000189170 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 4933404I11Rik-201ENSMUST00000190294 1202 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28690-202ENSMUST00000190325 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28456-202ENSMUST00000190521 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28834-202ENSMUST00000190714 537 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm28325-202ENSMUST00000191481 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm29132-202ENSMUST00000191588 622 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm30174-201ENSMUST00000191682 537 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm36261-201ENSMUST00000191807 537 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm38256-201ENSMUST00000192097 950 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm35070-201ENSMUST00000192589 621 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm36994-201ENSMUST00000192941 492 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm34550-202ENSMUST00000195186 537 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm30686-202ENSMUST00000195371 621 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm30353-202ENSMUST00000195486 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm36467-202ENSMUST00000195606 622 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm42698-201ENSMUST00000197790 762 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm9353-201ENSMUST00000200472 604 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm42867-201ENSMUST00000202995 469 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm19091-201ENSMUST00000208120 978 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm5599-201ENSMUST00000209602 788 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm3942-201ENSMUST00000218495 666 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 AC160109.1-201ENSMUST00000225592 729 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 AC129308.3-201ENSMUST00000225652 524 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 4931412I15Rik-201ENSMUST00000207844 1448 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm14308-203ENSMUST00000119149 1458 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gm14434-202ENSMUST00000120959 1458 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 4930421C12Rik-201ENSMUST00000200814 1574 ntBASIC8.68□□□□□ -1.02
Hoxd3P09027 Tln2-205ENSMUST00000215267 4999 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Wipf2-201ENSMUST00000037480 7011 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Hoxd3P09027 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC8.68□□□□□ -1.02
Hoxd3P09027 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hoxd3P09027 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hoxd3P09027 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hoxd3P09027 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hoxd3P09027 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
Hoxd3P09027 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hoxd3P09027 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
Hoxd3P09027 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC8.67□□□□□ -1.02
Hoxd3P09027 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
Hoxd3P09027 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
Hoxd3P09027 Gm5046-201ENSMUST00000100608 611 ntBASIC8.67□□□□□ -1.02
Hoxd3P09027 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
Hoxd3P09027 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
Hoxd3P09027 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms