Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Oosp2-201ENSMUST00000121793 677 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Gm14152-201ENSMUST00000127020 1073 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Hnf1aos1-202ENSMUST00000129609 516 ntTSL 2 BASIC16.13■□□□□ 0.17
Cux1P53564 4933424L21Rik-201ENSMUST00000142486 1186 ntTSL 5 BASIC16.13■□□□□ 0.17
Cux1P53564 Gm13660-201ENSMUST00000142828 722 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Gm6463-201ENSMUST00000182090 966 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Mir6981-201ENSMUST00000184293 115 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Gm37020-201ENSMUST00000195303 992 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Gm43122-202ENSMUST00000202259 526 ntTSL 2 BASIC16.13■□□□□ 0.17
Cux1P53564 Gm29803-201ENSMUST00000205069 375 ntBASIC16.13■□□□□ 0.17
Cux1P53564 E330011O21Rik-205ENSMUST00000211317 1062 ntTSL 5 BASIC16.13■□□□□ 0.17
Cux1P53564 AC100406.1-201ENSMUST00000217305 480 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Gm46189-201ENSMUST00000219395 644 ntTSL 3 BASIC16.13■□□□□ 0.17
Cux1P53564 AC124772.3-201ENSMUST00000222535 575 ntBASIC16.13■□□□□ 0.17
Cux1P53564 3110083C13Rik-202ENSMUST00000224786 907 ntBASIC16.13■□□□□ 0.17
Cux1P53564 AC122459.4-201ENSMUST00000228654 551 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Gm5292-201ENSMUST00000073317 580 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Gm37242-201ENSMUST00000191873 2085 ntBASIC16.13■□□□□ 0.17
Cux1P53564 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cux1P53564 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Gm42974-201ENSMUST00000199556 2654 ntBASIC16.12■□□□□ 0.17
Cux1P53564 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 AC242690.1-202ENSMUST00000214616 1742 ntTSL 5 BASIC16.12■□□□□ 0.17
Cux1P53564 Adat1-201ENSMUST00000034427 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Cfap100-201ENSMUST00000062750 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Gm38220-201ENSMUST00000195774 1447 ntBASIC16.12■□□□□ 0.17
Cux1P53564 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Gm11715-201ENSMUST00000129501 695 ntTSL 2 BASIC16.12■□□□□ 0.17
Cux1P53564 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC16.12■□□□□ 0.17
Cux1P53564 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC16.12■□□□□ 0.17
Cux1P53564 Gm22616-201ENSMUST00000179783 100 ntBASIC16.12■□□□□ 0.17
Cux1P53564 Gm45808-201ENSMUST00000210701 789 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Cux1P53564 Prrg2-211ENSMUST00000211337 676 ntTSL 3 BASIC16.12■□□□□ 0.17
Cux1P53564 Gm34397-201ENSMUST00000213192 708 ntTSL 3 BASIC16.12■□□□□ 0.17
Cux1P53564 AC102523.2-201ENSMUST00000227813 983 ntBASIC16.12■□□□□ 0.17
Cux1P53564 Opn1mw-201ENSMUST00000033771 1227 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Mgst2-201ENSMUST00000099106 603 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Gm15535-202ENSMUST00000148478 1519 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Gm7052-201ENSMUST00000167568 1512 ntBASIC16.12■□□□□ 0.17
Cux1P53564 Stau2-216ENSMUST00000162627 2773 ntTSL 5 BASIC16.12■□□□□ 0.17
Cux1P53564 Gm20953-201ENSMUST00000216399 2614 ntBASIC16.12■□□□□ 0.17
Cux1P53564 Gdf2-201ENSMUST00000100720 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Cux1P53564 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cux1P53564 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Il16-203ENSMUST00000145610 3183 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Gm38309-201ENSMUST00000192063 1518 ntBASIC16.11■□□□□ 0.17
Cux1P53564 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Cux1P53564 Hsdl1-204ENSMUST00000212517 2215 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Pde7a-203ENSMUST00000121951 382 ntTSL 3 BASIC16.11■□□□□ 0.17
Cux1P53564 n-R5s154-201ENSMUST00000122513 108 ntBASIC16.11■□□□□ 0.17
Cux1P53564 Gm28826-201ENSMUST00000190006 488 ntTSL 2 BASIC16.11■□□□□ 0.17
Cux1P53564 AC154643.1-201ENSMUST00000225643 625 ntBASIC16.11■□□□□ 0.17
Cux1P53564 AC154766.1-201ENSMUST00000226550 936 ntBASIC16.11■□□□□ 0.17
Cux1P53564 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Gm17644-201ENSMUST00000181272 3200 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Cux1P53564 Bpifb9b-201ENSMUST00000088921 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cux1P53564 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC16.1■□□□□ 0.17
Cux1P53564 5730403I07Rik-201ENSMUST00000183878 2033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Rhox10-201ENSMUST00000115150 763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Gm14111-201ENSMUST00000119851 999 ntBASIC16.1■□□□□ 0.17
Cux1P53564 Rnasek-203ENSMUST00000141880 465 ntTSL 2 BASIC16.1■□□□□ 0.17
Cux1P53564 Gm8955-201ENSMUST00000182945 1008 ntBASIC16.1■□□□□ 0.17
Cux1P53564 Gm28381-201ENSMUST00000188403 193 ntBASIC16.1■□□□□ 0.17
Cux1P53564 1110025M09Rik-201ENSMUST00000192082 855 ntBASIC16.1■□□□□ 0.17
Cux1P53564 Ighv1-8-201ENSMUST00000192236 293 ntBASIC16.1■□□□□ 0.17
Cux1P53564 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Gm6378-201ENSMUST00000084199 444 ntBASIC16.1■□□□□ 0.17
Cux1P53564 Gm5507-201ENSMUST00000091897 1008 ntBASIC16.1■□□□□ 0.17
Cux1P53564 Gm8055-201ENSMUST00000099956 1008 ntBASIC16.1■□□□□ 0.17
Cux1P53564 Phf21a-205ENSMUST00000111291 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC16.1■□□□□ 0.17
Cux1P53564 Gm45847-201ENSMUST00000209402 1880 ntTSL 3 BASIC16.1■□□□□ 0.17
Cux1P53564 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Fam13c-203ENSMUST00000173042 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Cux1P53564 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Cux1P53564 4833420G17Rik-201ENSMUST00000026519 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cux1P53564 A430018G15Rik-201ENSMUST00000124210 1314 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms