Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC11.28□□□□□ -0.6
Shmt1P50431 Gm12056-201ENSMUST00000148364 1257 ntTSL 5 BASIC11.28□□□□□ -0.6
Shmt1P50431 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC11.28□□□□□ -0.6
Shmt1P50431 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Gm40879-201ENSMUST00000220759 612 ntBASIC11.28□□□□□ -0.6
Shmt1P50431 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Gm9791-201ENSMUST00000060997 447 ntBASIC11.28□□□□□ -0.6
Shmt1P50431 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Shmt1P50431 Nt5dc1-202ENSMUST00000099973 761 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.28□□□□□ -0.6
Shmt1P50431 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Shmt1P50431 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC11.28□□□□□ -0.6
Shmt1P50431 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC11.28□□□□□ -0.6
Shmt1P50431 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC11.28□□□□□ -0.6
Shmt1P50431 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Shmt1P50431 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.28□□□□□ -0.6
Shmt1P50431 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Shmt1P50431 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Shmt1P50431 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Shmt1P50431 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.6
Shmt1P50431 Adgre5-202ENSMUST00000075843 3000 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 C2cd5-201ENSMUST00000087485 4265 ntTSL 5 BASIC11.27□□□□□ -0.6
Shmt1P50431 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Gdi1-201ENSMUST00000015435 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Mir9-3hg-202ENSMUST00000181511 3412 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Shmt1P50431 Gm13169-201ENSMUST00000122090 1459 ntBASIC11.27□□□□□ -0.6
Shmt1P50431 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Celf2-224ENSMUST00000182879 2223 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 AC159195.3-201ENSMUST00000225162 2211 ntBASIC11.27□□□□□ -0.61
Shmt1P50431 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Myc-204ENSMUST00000160009 1765 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Shmt1P50431 Gm25288-201ENSMUST00000122800 265 ntBASIC11.27□□□□□ -0.61
Shmt1P50431 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Fxyd1-214ENSMUST00000206328 545 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
Shmt1P50431 Gm45135-201ENSMUST00000206787 1184 ntBASIC11.27□□□□□ -0.61
Shmt1P50431 Gm45680-201ENSMUST00000211135 214 ntTSL 3 BASIC11.27□□□□□ -0.61
Shmt1P50431 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC11.27□□□□□ -0.61
Shmt1P50431 AC157650.1-201ENSMUST00000224582 610 ntBASIC11.27□□□□□ -0.61
Shmt1P50431 AC142266.1-201ENSMUST00000228107 415 ntBASIC11.27□□□□□ -0.61
Shmt1P50431 Stpg4-201ENSMUST00000040609 847 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 2310016G11Rik-201ENSMUST00000094460 992 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Shmt1P50431 Arhgap4-202ENSMUST00000114404 2895 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Shmt1P50431 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Stau2-216ENSMUST00000162627 2773 ntTSL 5 BASIC11.27□□□□□ -0.61
Shmt1P50431 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Shmt1P50431 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 Pax6-206ENSMUST00000111086 2601 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC11.26□□□□□ -0.61
Shmt1P50431 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Shmt1P50431 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Shmt1P50431 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC11.26□□□□□ -0.61
Shmt1P50431 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Shmt1P50431 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Shmt1P50431 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms