Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Amd-ps3-201ENSMUST00000072796 1496 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm26631-201ENSMUST00000181462 2505 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Tnfrsf22-204ENSMUST00000171066 1780 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm25148-201ENSMUST00000104611 123 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm15528-201ENSMUST00000117821 864 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm15617-201ENSMUST00000118973 771 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm6121-201ENSMUST00000119231 924 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm12269-201ENSMUST00000122273 717 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Bcas1os2-201ENSMUST00000131931 1174 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm11665-201ENSMUST00000148136 285 ntTSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm12484-201ENSMUST00000156311 581 ntTSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm22846-201ENSMUST00000157706 270 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Olfr180-201ENSMUST00000171656 1154 ntAPPRIS P2 TSL 2 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm2058-201ENSMUST00000178791 560 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm5342-201ENSMUST00000181982 1003 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Fam122c-203ENSMUST00000186314 898 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm37573-201ENSMUST00000193993 931 ntTSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm37028-201ENSMUST00000194276 107 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm21049-201ENSMUST00000197078 987 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm43928-201ENSMUST00000203737 409 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm44615-201ENSMUST00000206548 358 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Kcne3-205ENSMUST00000207358 1154 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 4933431C10Rik-201ENSMUST00000208973 1266 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm3028-201ENSMUST00000213805 1119 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 AC122891.1-201ENSMUST00000218671 268 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 AC167202.1-201ENSMUST00000219027 331 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 AC121804.1-201ENSMUST00000221016 394 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Stfa2l1-201ENSMUST00000079184 414 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Olfr1234-201ENSMUST00000099783 945 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm43102-201ENSMUST00000201004 2324 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Mecomos-201ENSMUST00000125611 5510 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC8.71□□□□□ -1.01
Hoxd3P09027 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Asb11-202ENSMUST00000036858 1445 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.01
Hoxd3P09027 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC8.71□□□□□ -1.01
Hoxd3P09027 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
Hoxd3P09027 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
Hoxd3P09027 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
Hoxd3P09027 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC8.71□□□□□ -1.02
Hoxd3P09027 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.02
Hoxd3P09027 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
Hoxd3P09027 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.02
Hoxd3P09027 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm12194-201ENSMUST00000117756 1012 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm10169-201ENSMUST00000121822 348 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm16397-201ENSMUST00000122201 494 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm17096-201ENSMUST00000172037 733 ntTSL 5 BASIC8.71□□□□□ -1.02
Hoxd3P09027 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC8.71□□□□□ -1.02
Hoxd3P09027 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm29155-201ENSMUST00000185910 269 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 1700034K08Rik-202ENSMUST00000188082 619 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm29410-201ENSMUST00000188383 694 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm29067-201ENSMUST00000190821 470 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm43743-201ENSMUST00000197898 697 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm43380-201ENSMUST00000200421 220 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm44712-201ENSMUST00000206250 1076 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 Olfr274-ps1-201ENSMUST00000216601 595 ntBASIC8.71□□□□□ -1.02
Hoxd3P09027 AC153955.1-201ENSMUST00000217458 663 ntTSL 3 BASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
Hoxd3P09027 Gm6841-201ENSMUST00000220602 598 ntBASIC8.71□□□□□ -1.02
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms