Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm12218-201ENSMUST00000117666 399 ntBASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm15003-201ENSMUST00000118884 446 ntBASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm3329-201ENSMUST00000159873 556 ntBASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm18776-201ENSMUST00000188833 654 ntBASIC12.02□□□□□ -0.49
Smc1aQ9CU62 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Mt1-202ENSMUST00000211807 1085 ntBASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 AC102569.1-201ENSMUST00000221563 685 ntBASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Zfp384-201ENSMUST00000046064 3108 ntTSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Sdk1-201ENSMUST00000074546 7063 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC12.02□□□□□ -0.49
Smc1aQ9CU62 Clec14a-201ENSMUST00000062254 4571 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm19680-201ENSMUST00000095050 1513 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Sf3b5-201ENSMUST00000105139 3841 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm38357-201ENSMUST00000195382 2464 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Tbl3-202ENSMUST00000126319 5226 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Trp73-205ENSMUST00000133533 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Sema4g-201ENSMUST00000026225 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Myo18a-223ENSMUST00000169105 6475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Zcchc4-201ENSMUST00000031077 5743 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Ifi211-201ENSMUST00000009340 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Mir453-201ENSMUST00000104732 82 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm14274-201ENSMUST00000117182 615 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm12179-201ENSMUST00000118344 1272 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm15197-201ENSMUST00000120526 478 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Mir1905-201ENSMUST00000122779 82 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm17214-201ENSMUST00000164501 541 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm18706-201ENSMUST00000210053 1066 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Ifih1-201ENSMUST00000028259 5470 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Tfdp1-204ENSMUST00000209885 2511 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Ankrd11-202ENSMUST00000098334 8455 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Gm37122-201ENSMUST00000195313 1567 ntBASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Smc1aQ9CU62 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC12□□□□□ -0.49
Smc1aQ9CU62 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Smc1aQ9CU62 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC12□□□□□ -0.49
Smc1aQ9CU62 Dysf-202ENSMUST00000089595 6613 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Smc1aQ9CU62 Styx-205ENSMUST00000226873 12974 ntAPPRIS P1 BASIC12□□□□□ -0.49
Smc1aQ9CU62 Cacna1e-207ENSMUST00000211821 6765 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Smc1aQ9CU62 Bcl9-201ENSMUST00000046521 6102 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Smc1aQ9CU62 St6galnac4-201ENSMUST00000102818 3626 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Smc1aQ9CU62 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Smc1aQ9CU62 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC12□□□□□ -0.49
Smc1aQ9CU62 Gm12463-201ENSMUST00000118271 849 ntBASIC12□□□□□ -0.49
Smc1aQ9CU62 Gm12948-201ENSMUST00000119406 682 ntBASIC12□□□□□ -0.49
Smc1aQ9CU62 Gm11979-201ENSMUST00000119629 743 ntBASIC12□□□□□ -0.49
Smc1aQ9CU62 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Smc1aQ9CU62 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC12□□□□□ -0.49
Smc1aQ9CU62 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC12□□□□□ -0.49
Smc1aQ9CU62 Gm25830-201ENSMUST00000158923 132 ntBASIC12□□□□□ -0.49
Smc1aQ9CU62 Gm16030-201ENSMUST00000159098 603 ntBASIC12□□□□□ -0.49
Smc1aQ9CU62 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms