Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
Rfx1P48377 Ano1-202ENSMUST00000118556 4566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm21115-201ENSMUST00000187565 2578 ntBASIC12.75□□□□□ -0.37
Rfx1P48377 Cdh18-207ENSMUST00000226693 2165 ntBASIC12.74□□□□□ -0.37
Rfx1P48377 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Bcl9-201ENSMUST00000046521 6102 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Cct8l1-201ENSMUST00000045016 1961 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Rfx1P48377 Ik-201ENSMUST00000007042 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Tcn2-205ENSMUST00000109991 1943 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Rfx1P48377 Fbxl12-206ENSMUST00000148631 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Rfx1P48377 Gm32219-201ENSMUST00000221234 1819 ntTSL 5 BASIC12.74□□□□□ -0.37
Rfx1P48377 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 AC242690.1-202ENSMUST00000214616 1742 ntTSL 5 BASIC12.74□□□□□ -0.37
Rfx1P48377 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC12.74□□□□□ -0.37
Rfx1P48377 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.74□□□□□ -0.37
Rfx1P48377 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC12.74□□□□□ -0.37
Rfx1P48377 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC12.74□□□□□ -0.37
Rfx1P48377 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.74□□□□□ -0.37
Rfx1P48377 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Gm40414-201ENSMUST00000197608 481 ntBASIC12.74□□□□□ -0.37
Rfx1P48377 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
Rfx1P48377 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC12.74□□□□□ -0.37
Rfx1P48377 Gm5451-201ENSMUST00000080545 579 ntBASIC12.74□□□□□ -0.37
Rfx1P48377 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Arhgap17-203ENSMUST00000167309 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Tmem63a-205ENSMUST00000161523 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Gm5124-202ENSMUST00000132683 2083 ntBASIC12.74□□□□□ -0.37
Rfx1P48377 Rad50-201ENSMUST00000020649 5153 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Pms1-201ENSMUST00000027267 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Gm26690-201ENSMUST00000181457 1997 ntTSL 5 BASIC12.74□□□□□ -0.37
Rfx1P48377 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Anxa7-207ENSMUST00000224975 2727 ntAPPRIS P2 BASIC12.74□□□□□ -0.37
Rfx1P48377 Slc12a5-209ENSMUST00000202623 3574 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Tmem63c-203ENSMUST00000146292 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Il18bp-202ENSMUST00000209368 2596 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Rfx1P48377 Robo4-203ENSMUST00000115048 3392 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Gm26658-201ENSMUST00000181067 2500 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 AC122293.1-201ENSMUST00000218333 2231 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Calr4-204ENSMUST00000106631 2155 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Pxdn-208ENSMUST00000220271 6377 ntTSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Tchhl1-201ENSMUST00000029516 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Gm5308-201ENSMUST00000196752 1354 ntBASIC12.73□□□□□ -0.37
Rfx1P48377 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Rfx1P48377 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Akap1-203ENSMUST00000107904 2673 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Prnd-201ENSMUST00000110169 1918 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 AC124561.1-202ENSMUST00000228652 1929 ntBASIC12.73□□□□□ -0.37
Rfx1P48377 Rhox2-ps-201ENSMUST00000117421 322 ntBASIC12.73□□□□□ -0.37
Rfx1P48377 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Rfx1P48377 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Gm19412-201ENSMUST00000185388 436 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.73□□□□□ -0.37
Rfx1P48377 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 AC122035.1-201ENSMUST00000227576 1016 ntBASIC12.73□□□□□ -0.37
Rfx1P48377 AC154757.2-201ENSMUST00000228885 743 ntBASIC12.73□□□□□ -0.37
Rfx1P48377 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Vmn1r8-201ENSMUST00000078186 1213 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Rfx1P48377 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Rfx1P48377 Gripap1-201ENSMUST00000065932 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Scmh1-202ENSMUST00000064991 2548 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Gm26848-201ENSMUST00000181052 2467 ntTSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Prdx6-202ENSMUST00000071718 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Ptbp3-201ENSMUST00000030076 6855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 5730455P16Rik-204ENSMUST00000179332 4536 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 N4bp2-201ENSMUST00000087264 5308 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 9530026P05Rik-201ENSMUST00000181121 2142 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Rfx1P48377 Dctn1-202ENSMUST00000113907 4205 ntTSL 5 BASIC12.73□□□□□ -0.37
Rfx1P48377 Zbtb3-201ENSMUST00000172175 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Gpr75-201ENSMUST00000109430 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Odf2-207ENSMUST00000113762 2353 ntTSL 5 BASIC12.72□□□□□ -0.37
Rfx1P48377 AC121574.1-201ENSMUST00000228770 3132 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Gm6641-201ENSMUST00000196100 1315 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Adam6a-201ENSMUST00000053086 2558 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Rfx1P48377 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Gm25661-201ENSMUST00000157704 296 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Gm2383-201ENSMUST00000181461 807 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Mir8115-201ENSMUST00000184992 119 ntBASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms