Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Tpm1-205ENSMUST00000113685 1208 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Cdx2P43241 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Cdx2P43241 F730016J06Rik-201ENSMUST00000126140 1344 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm12254-201ENSMUST00000134617 471 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 Spef2-203ENSMUST00000159368 1422 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm16537-201ENSMUST00000161529 702 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gal3st2b-201ENSMUST00000177958 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC10.2□□□□□ -0.78
Cdx2P43241 Kif4-ps-202ENSMUST00000185083 652 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
Cdx2P43241 4930447F24Rik-201ENSMUST00000194140 1341 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm38111-201ENSMUST00000194817 2741 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Cdx2P43241 4930573C15Rik-201ENSMUST00000197707 777 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm44304-201ENSMUST00000200509 145 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm43997-201ENSMUST00000203986 1005 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 Gm44196-203ENSMUST00000204359 1190 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm18862-201ENSMUST00000204643 933 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gm19178-201ENSMUST00000217524 1819 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 A1cf-204ENSMUST00000224564 1432 ntBASIC10.2□□□□□ -0.78
Cdx2P43241 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Ptma-201ENSMUST00000045897 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Hspb11-201ENSMUST00000046558 608 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Olfr642-201ENSMUST00000052660 945 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Cdx2P43241 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Supt4a-201ENSMUST00000093955 706 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC10.2□□□□□ -0.78
Cdx2P43241 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdx2P43241 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Cdx2P43241 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC10.19□□□□□ -0.78
Cdx2P43241 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdx2P43241 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdx2P43241 Tipin-205ENSMUST00000216594 1841 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdx2P43241 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm45165-201ENSMUST00000207763 1631 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdx2P43241 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm35963-201ENSMUST00000211762 1425 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdx2P43241 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
Cdx2P43241 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm14633-201ENSMUST00000121152 470 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 3110039M20Rik-201ENSMUST00000127041 868 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm15015-201ENSMUST00000135491 636 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx2P43241 Zfp961-204ENSMUST00000136516 601 ntTSL 2 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm12207-201ENSMUST00000143016 494 ntTSL 2 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm11521-201ENSMUST00000143302 329 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm15020-201ENSMUST00000147142 636 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx2P43241 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm20186-201ENSMUST00000201775 737 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm44388-201ENSMUST00000204350 258 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 Gm44236-201ENSMUST00000204492 513 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 AC113291.2-201ENSMUST00000215490 1205 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 CU025215.1-201ENSMUST00000222986 603 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 AC163646.3-202ENSMUST00000228685 691 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm8618-201ENSMUST00000097570 432 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Hormad2-202ENSMUST00000109948 1969 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdx2P43241 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Gm45532-201ENSMUST00000210342 3620 ntBASIC10.19□□□□□ -0.78
Cdx2P43241 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Vangl1-208ENSMUST00000168312 1740 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx2P43241 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 905.4 ms