Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dab2-202ENSMUST00000080880 4663 ntAPPRIS P4 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Trpm1-218ENSMUST00000206277 5076 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 Ctnnd1-213ENSMUST00000111687 6030 ntTSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 Atf7ip-201ENSMUST00000032335 8059 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC8.8□□□□□ -1
Hmgb3O54879 Smg7-202ENSMUST00000073441 5767 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Eif2ak4-203ENSMUST00000110869 1715 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Gm18642-201ENSMUST00000206642 1400 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Crry-ps-201ENSMUST00000079090 1309 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Ubap2l-215ENSMUST00000198322 3385 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Gpr39-201ENSMUST00000027581 2691 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Tor1aip2-204ENSMUST00000111754 2491 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Adra1a-203ENSMUST00000159365 4118 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Mfsd2b-201ENSMUST00000045921 2490 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Zfp142-202ENSMUST00000066986 5756 ntTSL 5 BASIC8.79□□□□□ -1
Hmgb3O54879 Arhgap21-213ENSMUST00000173194 6920 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 AC144938.1-201ENSMUST00000223994 2167 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Slc16a5-202ENSMUST00000106532 2062 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Cct3-201ENSMUST00000001452 1977 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Plscr4-201ENSMUST00000034941 3204 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Slc39a9-201ENSMUST00000085245 5201 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Anln-201ENSMUST00000040912 4605 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Gm38025-201ENSMUST00000193926 2308 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Slc16a7-202ENSMUST00000105257 2238 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
Hmgb3O54879 Gm14592-201ENSMUST00000117201 560 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Gm15264-201ENSMUST00000118050 502 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC8.79□□□□□ -1
Hmgb3O54879 Cd63-ps-202ENSMUST00000154992 717 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Gm17420-201ENSMUST00000164753 153 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC8.79□□□□□ -1
Hmgb3O54879 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC8.79□□□□□ -1
Hmgb3O54879 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Gm4482-201ENSMUST00000200876 742 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC8.79□□□□□ -1
Hmgb3O54879 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Gm21769-201ENSMUST00000211922 111 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Hmgb3O54879 AC166349.1-201ENSMUST00000220866 695 ntBASIC8.79□□□□□ -1
Hmgb3O54879 AC140375.2-201ENSMUST00000225283 584 ntBASIC8.79□□□□□ -1
Hmgb3O54879 AC137950.2-201ENSMUST00000227127 1089 ntBASIC8.79□□□□□ -1
Hmgb3O54879 AC164437.3-201ENSMUST00000228323 347 ntBASIC8.79□□□□□ -1
Hmgb3O54879 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Rrp7a-201ENSMUST00000018184 4363 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Bcat1-203ENSMUST00000111742 2556 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Ncf2-201ENSMUST00000027754 2596 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Phc1-215ENSMUST00000161739 3893 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Plekhb2-203ENSMUST00000156687 5176 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Snd1-206ENSMUST00000167201 3781 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Cyfip2-202ENSMUST00000093166 6298 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Gpm6b-205ENSMUST00000112227 3294 ntAPPRIS ALT1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Akap13-205ENSMUST00000207750 12597 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Hmgb3O54879 Cdcp2-201ENSMUST00000062495 2611 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Cct8l1-201ENSMUST00000045016 1961 ntAPPRIS P1 BASIC8.79□□□□□ -1
Hmgb3O54879 Polq-201ENSMUST00000054034 8552 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Ahrr-202ENSMUST00000109640 2419 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hmgb3O54879 Rps6kc1-201ENSMUST00000061611 3995 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Hmgb3O54879 Man1b1-201ENSMUST00000042390 3755 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Pax6-207ENSMUST00000111087 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Gm37447-201ENSMUST00000195625 2928 ntBASIC8.78□□□□□ -1
Hmgb3O54879 Abca8a-201ENSMUST00000046223 5614 ntAPPRIS P2 TSL 5 BASIC8.78□□□□□ -1
Hmgb3O54879 Trpm3-201ENSMUST00000037901 5082 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Crispld2-203ENSMUST00000132583 4182 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Atp6v0a4-201ENSMUST00000040259 3285 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Hsp90aa1-202ENSMUST00000094361 3281 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Gm10748-202ENSMUST00000194396 2379 ntBASIC8.78□□□□□ -1
Hmgb3O54879 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Pex5-203ENSMUST00000112530 3051 ntTSL 5 BASIC8.78□□□□□ -1
Hmgb3O54879 Serpina3g-201ENSMUST00000043315 1803 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Ap3s2-201ENSMUST00000075657 5813 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Trem1-201ENSMUST00000048782 2993 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Hist4h4-201ENSMUST00000179285 2863 ntAPPRIS P1 BASIC8.78□□□□□ -1
Hmgb3O54879 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC8.78□□□□□ -1
Hmgb3O54879 Inpp4a-205ENSMUST00000132401 3234 ntTSL 5 BASIC8.78□□□□□ -1
Hmgb3O54879 Tchhl1-201ENSMUST00000029516 2066 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Atg13-202ENSMUST00000076803 3551 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
Hmgb3O54879 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
Hmgb3O54879 Gm12957-201ENSMUST00000117835 377 ntBASIC8.78□□□□□ -1
Hmgb3O54879 Gm15711-201ENSMUST00000118889 535 ntBASIC8.78□□□□□ -1
Hmgb3O54879 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC8.78□□□□□ -1
Hmgb3O54879 Gm15276-201ENSMUST00000145953 498 ntBASIC8.78□□□□□ -1
Hmgb3O54879 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
Hmgb3O54879 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC8.78□□□□□ -1
Hmgb3O54879 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC8.78□□□□□ -1
Hmgb3O54879 AA914427-201ENSMUST00000193194 1166 ntBASIC8.78□□□□□ -1
Hmgb3O54879 Gm36028-202ENSMUST00000205931 1161 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
Hmgb3O54879 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC8.78□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms