Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Rbm12-202ENSMUST00000109604 6635 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Thsd7b-201ENSMUST00000040311 3895 ntTSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Zfp658-201ENSMUST00000005597 2664 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Gramd1b-202ENSMUST00000118159 2781 ntTSL 5 BASIC8.82□□□□□ -1
Hmgb3O54879 Gm37651-201ENSMUST00000194679 1494 ntBASIC8.82□□□□□ -1
Hmgb3O54879 Fndc7-202ENSMUST00000102620 3477 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Elmod3-202ENSMUST00000114069 2164 ntAPPRIS P2 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Klhl7-202ENSMUST00000163409 2857 ntTSL 2 BASIC8.82□□□□□ -1
Hmgb3O54879 Slc12a5-209ENSMUST00000202623 3574 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Clgn-201ENSMUST00000002259 3902 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC8.82□□□□□ -1
Hmgb3O54879 Sec24c-201ENSMUST00000048657 4461 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Hmgb3O54879 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC8.81□□□□□ -1
Hmgb3O54879 Gm5159-201ENSMUST00000212733 1652 ntBASIC8.81□□□□□ -1
Hmgb3O54879 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Ggct-202ENSMUST00000131475 3960 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Gm13081-201ENSMUST00000121527 5599 ntBASIC8.81□□□□□ -1
Hmgb3O54879 Pcdh15-241ENSMUST00000195531 5241 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Ankrd1-201ENSMUST00000025718 1765 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Zfhx3-204ENSMUST00000220518 17152 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Igsf9b-204ENSMUST00000214357 16144 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Phka2-204ENSMUST00000112380 4341 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Cdk6-202ENSMUST00000165117 11525 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 4932442E05Rik-201ENSMUST00000191892 2717 ntBASIC8.81□□□□□ -1
Hmgb3O54879 AC153498.1-201ENSMUST00000219775 2722 ntBASIC8.81□□□□□ -1
Hmgb3O54879 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC8.81□□□□□ -1
Hmgb3O54879 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC8.81□□□□□ -1
Hmgb3O54879 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC8.81□□□□□ -1
Hmgb3O54879 AY036118-201ENSMUST00000200021 923 ntBASIC8.81□□□□□ -1
Hmgb3O54879 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC8.81□□□□□ -1
Hmgb3O54879 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Saa-ps-201ENSMUST00000211148 320 ntBASIC8.81□□□□□ -1
Hmgb3O54879 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Gm14204-202ENSMUST00000123944 5380 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Aco2-201ENSMUST00000023116 2918 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Ptk2b-201ENSMUST00000022622 4034 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Serpinb8-202ENSMUST00000112706 4581 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Mid1-214ENSMUST00000163810 3689 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 AC121574.1-201ENSMUST00000228770 3132 ntBASIC8.81□□□□□ -1
Hmgb3O54879 Cptp-201ENSMUST00000030950 2662 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Capn3-206ENSMUST00000110721 2898 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Dhcr7-211ENSMUST00000207143 1652 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Rhobtb1-201ENSMUST00000020101 4352 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Gripap1-201ENSMUST00000065932 3156 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Sh3bgrl2-203ENSMUST00000188030 2549 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Hnrnpk-216ENSMUST00000177019 2626 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Bpifb9b-201ENSMUST00000088921 2067 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hmgb3O54879 Rasgrp4-202ENSMUST00000094617 4617 ntTSL 5 BASIC8.81□□□□□ -1
Hmgb3O54879 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 Mlxipl-201ENSMUST00000005507 3622 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Xpo5-201ENSMUST00000087031 3709 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Gm45165-201ENSMUST00000207763 1631 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Erbin-202ENSMUST00000053927 6103 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC8.8□□□□□ -1
Hmgb3O54879 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 F5-201ENSMUST00000086040 7430 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Slc43a2-201ENSMUST00000042561 6891 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Gm21142-201ENSMUST00000179999 2604 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Dhx30-219ENSMUST00000199529 4373 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Gm23596-201ENSMUST00000104304 132 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC8.8□□□□□ -1
Hmgb3O54879 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC8.8□□□□□ -1
Hmgb3O54879 H2-Q3-201ENSMUST00000172583 608 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC8.8□□□□□ -1
Hmgb3O54879 Gm28071-201ENSMUST00000190355 478 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC8.8□□□□□ -1
Hmgb3O54879 Gm43667-201ENSMUST00000198616 1095 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC8.8□□□□□ -1
Hmgb3O54879 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC8.8□□□□□ -1
Hmgb3O54879 Gm31941-201ENSMUST00000209689 350 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC8.8□□□□□ -1
Hmgb3O54879 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC8.8□□□□□ -1
Hmgb3O54879 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 AC112945.1-201ENSMUST00000226413 514 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC8.8□□□□□ -1
Hmgb3O54879 Entpd5-201ENSMUST00000021662 4931 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hmgb3O54879 Gm29773-201ENSMUST00000212751 1895 ntTSL 2 BASIC8.8□□□□□ -1
Hmgb3O54879 Phf20-ps-201ENSMUST00000185066 2886 ntBASIC8.8□□□□□ -1
Hmgb3O54879 Mid1-204ENSMUST00000112104 3860 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 92.1 ms