Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 4930578C19Rik-201ENSMUST00000044188 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm14017-201ENSMUST00000121934 386 ntBASIC12.81□□□□□ -0.36
Rfx1P48377 Tmsb15l-201ENSMUST00000127404 816 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Rfx1P48377 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.81□□□□□ -0.36
Rfx1P48377 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC12.81□□□□□ -0.36
Rfx1P48377 Gm11915-201ENSMUST00000153669 358 ntTSL 5 BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm37905-201ENSMUST00000195310 341 ntBASIC12.81□□□□□ -0.36
Rfx1P48377 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC12.81□□□□□ -0.36
Rfx1P48377 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC12.81□□□□□ -0.36
Rfx1P48377 Daam2-201ENSMUST00000057610 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Baat-201ENSMUST00000043056 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Acsl1-201ENSMUST00000034046 3897 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC12.81□□□□□ -0.36
Rfx1P48377 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm10031-201ENSMUST00000190422 2653 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm20715-201ENSMUST00000054781 4460 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Rfx1P48377 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm15651-201ENSMUST00000159953 2507 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Amer3-201ENSMUST00000052670 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Tgfbrap1-201ENSMUST00000095014 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Abcc4-201ENSMUST00000036554 5715 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Adat1-202ENSMUST00000120457 1677 ntTSL 5 BASIC12.8□□□□□ -0.36
Rfx1P48377 Dhcr7-211ENSMUST00000207143 1652 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Rfx1P48377 Rdh11-201ENSMUST00000085254 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Mon2-201ENSMUST00000037557 5511 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Kif3a-202ENSMUST00000118353 2178 ntTSL 5 BASIC12.8□□□□□ -0.36
Rfx1P48377 Mlxipl-201ENSMUST00000005507 3622 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Ptbp3-202ENSMUST00000102883 3409 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Rfx1P48377 Il12rb2-201ENSMUST00000018485 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Ralgapb-202ENSMUST00000109485 6709 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Rfx1P48377 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Rfx1P48377 Gm16166-201ENSMUST00000118291 787 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Gm13422-201ENSMUST00000118834 504 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Gm11956-201ENSMUST00000119525 512 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 4933416E03Rik-201ENSMUST00000133091 1126 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 0610040B10Rik-202ENSMUST00000162890 600 ntTSL 5 BASIC12.8□□□□□ -0.36
Rfx1P48377 Ap1g1-206ENSMUST00000179104 1096 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Gm4654-201ENSMUST00000183305 982 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Gm27341-201ENSMUST00000183570 106 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Rfx1P48377 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC12.8□□□□□ -0.36
Rfx1P48377 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Gm6781-201ENSMUST00000038304 1242 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Olfr225-201ENSMUST00000055276 1260 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Rfx1P48377 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Edaradd-201ENSMUST00000179308 6668 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Gm15832-201ENSMUST00000146314 1832 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Dusp16-202ENSMUST00000129433 3993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 AC126459.1-201ENSMUST00000214791 2123 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Gm38344-201ENSMUST00000195306 1353 ntBASIC12.8□□□□□ -0.36
Rfx1P48377 Zfp474-201ENSMUST00000072666 1930 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Clgn-201ENSMUST00000002259 3902 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Galnt16-206ENSMUST00000219993 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx1P48377 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 AU041133-202ENSMUST00000201286 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Zfp948-201ENSMUST00000088787 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Cdc23-203ENSMUST00000133181 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Rfx1P48377 Parp1-201ENSMUST00000027777 3873 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Rfx1P48377 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Rfx1P48377 2810032G03Rik-202ENSMUST00000163627 2514 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Rfx1P48377 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 4921508D12Rik-201ENSMUST00000124095 1075 ntTSL 2 BASIC12.79□□□□□ -0.36
Rfx1P48377 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Platr20-202ENSMUST00000143209 937 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC12.79□□□□□ -0.36
Rfx1P48377 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm37826-201ENSMUST00000195329 322 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 Nme6-206ENSMUST00000197627 905 ntTSL 3 BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm44155-201ENSMUST00000203923 412 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 AC159246.1-201ENSMUST00000214478 249 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 4930550C14Rik-204ENSMUST00000217318 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx1P48377 Gm18042-201ENSMUST00000219887 790 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 CT009764.1-201ENSMUST00000222260 483 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 CT010486.3-201ENSMUST00000224555 811 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 Ginm1-202ENSMUST00000065124 300 ntBASIC12.79□□□□□ -0.36
Rfx1P48377 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms