Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col7a1Q63870 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col7a1Q63870 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col7a1Q63870 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.09■□□□□ 0.33
Col7a1Q63870 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col7a1Q63870 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col7a1Q63870 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col7a1Q63870 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col7a1Q63870 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.08■□□□□ 0.33
Col7a1Q63870 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col7a1Q63870 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Col7a1Q63870 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.08■□□□□ 0.32
Col7a1Q63870 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col7a1Q63870 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.08■□□□□ 0.32
Col7a1Q63870 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col7a1Q63870 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col7a1Q63870 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col7a1Q63870 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.07■□□□□ 0.32
Col7a1Q63870 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col7a1Q63870 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 Gm6365-201ENSMUST00000054711 744 ntBASIC17.07■□□□□ 0.32
Col7a1Q63870 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col7a1Q63870 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.06■□□□□ 0.32
Col7a1Q63870 Gm6576-201ENSMUST00000169678 883 ntBASIC17.06■□□□□ 0.32
Col7a1Q63870 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col7a1Q63870 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col7a1Q63870 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.06■□□□□ 0.32
Col7a1Q63870 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col7a1Q63870 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col7a1Q63870 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col7a1Q63870 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col7a1Q63870 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.06■□□□□ 0.32
Col7a1Q63870 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col7a1Q63870 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col7a1Q63870 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col7a1Q63870 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col7a1Q63870 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.05■□□□□ 0.32
Col7a1Q63870 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col7a1Q63870 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Col7a1Q63870 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col7a1Q63870 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.05■□□□□ 0.32
Col7a1Q63870 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.05■□□□□ 0.32
Col7a1Q63870 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col7a1Q63870 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.05■□□□□ 0.32
Col7a1Q63870 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col7a1Q63870 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col7a1Q63870 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Col7a1Q63870 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col7a1Q63870 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col7a1Q63870 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.04■□□□□ 0.32
Col7a1Q63870 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col7a1Q63870 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.04■□□□□ 0.32
Col7a1Q63870 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col7a1Q63870 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col7a1Q63870 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.03■□□□□ 0.32
Col7a1Q63870 Gm27275-201ENSMUST00000184318 272 ntBASIC17.03■□□□□ 0.32
Col7a1Q63870 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.03■□□□□ 0.32
Col7a1Q63870 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Col7a1Q63870 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.03■□□□□ 0.32
Col7a1Q63870 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.03■□□□□ 0.32
Col7a1Q63870 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col7a1Q63870 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col7a1Q63870 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.02■□□□□ 0.32
Col7a1Q63870 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col7a1Q63870 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col7a1Q63870 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col7a1Q63870 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Col7a1Q63870 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.01■□□□□ 0.31
Col7a1Q63870 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col7a1Q63870 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col7a1Q63870 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Col7a1Q63870 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col7a1Q63870 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col7a1Q63870 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col7a1Q63870 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col7a1Q63870 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Col7a1Q63870 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17■□□□□ 0.31
Col7a1Q63870 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC17■□□□□ 0.31
Col7a1Q63870 Gm21362-201ENSMUST00000194272 928 ntBASIC17■□□□□ 0.31
Col7a1Q63870 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Col7a1Q63870 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col7a1Q63870 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms